SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24570

Length: 402 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24570
CGTCGTGACCTTGGCTGTCACTCAAAACCGTATGATATCGCTGTCAATTTTCCGCATTCGGTATTTTAATTCATTAACATGAAATTTATTCCATGATACGGGGCGACTTATTCCACAGCATTATTCATCATTTCTTACCCTACAGTGGCCTGAATATTTGCGAGGTTTATTTTTGTGCGATCTGCCAGTTTTTGATTTCCAGGCTCGGCAGGGGCTTATTTGAGAGAAGCATTTGAACAATGGTGCTGTTTAGAGGGGGATCGGTTCTGTCAAAGATTTATTCTCATGTCGTACGCCAATCATCCACTAGTTATCATTCTGTTCGTTGGCTTCAAGTTCAAAGTGCACCGCAGGAGGATCTTCGTGCTCAATTGCAAGACCTCATTCCAGAGCAACAGGAAA

Ace file of the UniGene sp_v1.1_unigene24570

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Citrate synthase n=1 Tax=Picea sitchensis RepID=B8LLL1_PICSI	-	-	1.0e-17	87%
FL-Next	sp=Citrate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	unknown [Picea sitchensis]	-	-	1.97341e-17	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL1

Fln msg: Distance to subject end: 423 aas, your sequence is shorter than subject: 54 - 477

Fln protein: MVLFRGGSVLSKIYSHVVRQSSTSYHSVRWLQVQSAPQEDLRAQLQDLIPEQQE

Protein Length: 55

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAACCGTATGATATCGCTGTCAATTTTCCGCATTCGGTATTTTAATTCATTAACATGAAATTTATTCCATGATACGGGGCGACTTATTCCACAGCATTATTCATCATTTCTTACCCTACAGTGGCCTGAATATTTGCGAGGTTTATTTTTGTGCGATCTGCCAGTTTTTGATTTCCAGGCTCGGCAGGGGCTTATTTGAGAGAAGCATTTGAACA_-_ATGGTGCTGTTTAGAGGGGGATCGGTTCTGTCAAAGATTTATTCTCATGTCGTACGCCAATCATCCACTAGTTATCATTCTGTTCGTTGGCTTCAAGTTCAAAGTGCACCGCAGGAGGATCTTCGTGCTCAATTGCAAGACCTCATTCCAGAGCAACAGGAAA

Fln Alignment:

sp_v1.1_unigene24570___MVLFRGGSVLSKIYSHVVRQSSTSYHSVRWLQVQSAPQEDLRAQLQDLIPEQQE
B8LLL1_______________MVLFRGGSVLSKFCSRVVHQPSTSYRSVRWLQVQSAPQEDLRAQLQELIPEQQE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
41		50		50	1.0
42		50		50	1.0
49		50		50	1.0
52			33	66	1.0
53			33	66	1.0
54		66		33	1.0
55		16		50	1.0
56		16	83		0.994512
57			16	33	1.0
60		33		66	1.0
63	33		66		1.0
64	33		66		1.0
66	66			33	1.0
111			16	83	0.994512
210	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain