SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24565

Length: 766 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24565

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Pinus radiata RepID=O24485_PINRA	-	-	91%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	91%
Blast2go	protein	-	-	57%

Source	InterPros	Term	Type	Identity
Blast2go	Plant lipid transfer protein/Par allergen	IPR000528	-	57%
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	57%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	57%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	57%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
100	9			90	0.999872
114	90	9			0.999872
144		92		7	0.999602
174		95	4		0.996252
175	95		4		0.996252
180	95		4		0.99692
220	95		4		0.99692
377	88	1			1.0
466	4		92		0.999762
467	95		4		0.999989
616	80			19	1.0
645	7		92		0.999664
676	60			40	1.0
677	55			44	1.0
679	55			44	1.0
680	55		44		1.0
682	28		57		1.0
683	33			66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain