SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24561

Length: 1406 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24561

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L8, putative; K02938 large subunit ribosomal protein L8e	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	96%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L2	IPR002171	-	96%
Blast2go	Translation protein SH3-like	IPR008991	-	96%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	96%
Blast2go	Translation protein SH3-like, subgroup	IPR014722	-	96%
Blast2go	Ribosomal protein L2, domain 3	IPR014726	-	96%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	96%
Blast2go	Ribosomal Proteins L2, RNA binding domain	IPR022666	-	96%
Blast2go	Ribosomal protein L2, C-terminal	IPR022669	-	96%
Blast2go	Ribosomal protein L2, conserved site	IPR022671	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ62

Fln msg:

Fln protein: MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDYGERNGYIRGIITDVIHDPGRGAPLCKVTFRHPFRYKHQKELFVAAEGMYSGQFVYCGKKANLTVGNVLPLRSIPEGAIVCNVEQNVGDRGSFARASGDYAIVVSHNIDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKMDN*

Protein Length: 261

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTTTTTTCCAACGTGTAGATGTCGAATTAAGGCGGGGTTATGTTAATTATTGTAAATTCACACAATACAAAATTAGGGTTTATGGGGTTTGAGTAAATGTTCCACCCACATTAGGGTTAGGGTTTATACCCAACTAGGGTTTGTAGGGGATTCGCATCTTGACGAAACCCCTTAGCCATATCTGTTACTTCCATTTTCGGAGGCGCAACAGATCCAAACTCTGTGTAGTGATCTGCTCTGGTCTGCAGAC_-_ATGGGTCGCGTTATTCGTGCACAGAGAAAGGGAGCAGGCTCCGTGTTCAAATCCCACACCCATCACAGGAAGGGACCTGCACGTTTCAGAAGCCTCGACTATGGCGAGCGCAATGGCTACATTAGGGGAATTATCACGGACGTCATACACGATCCTGGCCGCGGCGCTCCCCTCTGCAAGGTGACCTTCAGGCACCCATTCCGTTACAAGCATCAGAAGGAGCTCTTCGTAGCGGCCGAAGGTATGTACTCGGGACAGTTCGTTTACTGCGGAAAGAAGGCCAATTTGACTGTGGGTAACGTGTTGCCCTTGAGGTCTATTCCGGAGGGAGCCATTGTCTGCAACGTGGAACAGAATGTCGGCGATCGGGGTTCGTTTGCTAGGGCTTCTGGAGACTACGCCATCGTCGTCAGCCACAATATCGATAACGGCACTACCAGGGTGAAGCTTCCCTCTGGAGCTAAGAAGATTGTGCCAAGTGGTTGTAGAGCTATGATTGGTCAAGTTGCTGGAGGTGGAAGAACAGAAAAACCAATGCTCAAGGCTGGCAATGCATACCACAAATACAGGGTCAAAAGAAACTCTTGGCCCAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCTAGTACTGTACGTCGTGATGCACCACCAGGGCAAAAAGTTGGGCTTATTGCTGCCAGAAGAACTGGTCGTCTGCGTGGACAAGCTGCATCAGCAGCTGCAAAGATGGACAACTAA___TCTTAGTTCATTTCTATTTTGCAAGGATTTCATTGTCTTATTTTGGTGTTTTATTTTGTCGTAATGTGATTTTTCAAGGGTTTTGATCCTTTTTATTCAGGTAGTAGAAGCAATTGTTTACAGAGGCCAGGAAACTTATAACTGCATACCCTTATTTTCGTTGTTTATTTAACTTTTATGTTGCAACGATATATGTCAACCAAGTAATAATCTCAGCTTTCTTTTACATGATTGTCTATAGGTGAGCAGCTTGCTCACACAACTGTATGATTTTTTAGACTTGCAATAATTATACGATATATGATAGTTTACCACAAAACTTATTAATATATTTTACCACAGAACTTG

Fln Alignment:

sp_v1.1_unigene24561___MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDYGERNGYIRGIITDVIHDPGRGAPLCKVTFRHPFRYKHQKELFVAAEGMYSGQFVYCGKKANLTVGNVLPLRSIPEGAIVCNVEQNVGDRGSFARASGDYAIVVSHNIDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKMDN
C0PQ62_______________MGRVIRAQRKGAGSVFTSHTHHRKGPARFRSLDYGERNGYIRGIVTDVIHDPGRGAPLCKVTFRHAFRYRHQKELFVAAEGMYTGQFVYCGKKANLTVGNVLPLRSIPEGAVVCNVEQHVGDRGSFARASGDYAIVVSHNPDNGTTRVKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKTDN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
63		20		80	0.995493
160	14	85			0.993533
161		85		14	0.993533
162	85		14		0.993533
163	85		14		0.993533
164		85	14		0.993533
165			14	85	0.993533
349			88	11	0.923564
399	87			12	0.992554
402			16	83	0.994512
403		20		80	0.995493
407			80	20	0.995493
410	80		20		0.995493
412			20	80	0.995493
420	75	25			0.996473
1042		4	45	50	1.0
1086			73	26	1.0
1113	87	12			0.992554
1210		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain