SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24560

Length: 870 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24560

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	universal stress protein (USP) family protein	-	-	3.0e-10	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UspA	IPR006016	-	0.0	72%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
112		25		75	0.996473
546		33		66	1.0
558		33		66	1.0
600	25		75		0.996473
615	25	75			0.996473
618	75		25		0.996473
629	50		50		1.0
632		75		25	0.996473
633			25	75	0.996473
635			25	75	0.996473
636	25			75	0.996473
640	25		75		0.996473
703	33	66			0.997452
710		33		66	0.997452
726	33			66	0.997452
758	33			66	0.997452
769	33		66		0.997452
773		33		66	0.997452
813		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
227	240	CAG CAG CAG CAG CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain