SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24556

Length: 836 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24556

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Pinus radiata RepID=O24485_PINRA	-	-	91%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	91%
Blast2go	protein	-	-	57%

Source	InterPros	Term	Type	Identity
Blast2go	Plant lipid transfer protein/Par allergen	IPR000528	-	57%
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	57%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	57%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	57%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
327		16		83	0.994512
335		20		80	0.995493
342	80			20	0.995493
544		0		98	0.998605
618		1		98	0.999953
640	0	2	0	26	1.0
642	4	4	1	87	1.0
643	31	8	1	0	1.0
644	3	92	1	2	0.999989
645	5	2	2	90	1.0
646	94	5			0.999994
647	6	88	2	2	0.999922
648	10		2	87	1.0
649	9	90			1.0
650	5			95	0.997749
651	5	2		92	0.990091
652	5			94	0.997984
653	5	94			0.9982
676	17		82		1.0
742		57	42		1.0
750	83			16	0.994512
751	50			50	1.0
752		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain