SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24553

Length: 1064 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24553

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sec61beta family protein; K09481 protein transport protein SEC61 subunit beta	-	-	2.0e-15	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	protein	-	-	3.68527e-19	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.68527e-19	95%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
179		83		16	0.994512
191		14		85	0.993533
271			85	14	0.993533
274			85	14	0.993533
281		85	14		0.993533
285		16	83		0.994512
286			83	16	0.994512
287	83			16	0.994512
290	83	16			0.994512
291			83	16	0.994512
294			83	16	0.994512
295		16	83		0.994512
296	16		83		0.994512
297		16		83	0.994512
300	14	14	71		0.984337
302			85	14	0.993533
303		10	90		0.999898
309		9	90		0.999872
312		9	90		0.999872
317		9		90	0.999872
320		90		9	0.999872
478	36		63		1.0
627	3	96			0.990463
681	3		96		0.993037
696	96		3		0.993037
1051	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
258	275	GGC GGC GGC GGC GGC GGC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain