SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24524

Length: 3016 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene24524
CGTCGTGACCTTGGCTGTCACTCAATCCAGATTACACGTCCGCGTTTGAATTCCCCGCATGTTGGTCATTCTTGTCCCCCTCTTTACCGTGATACCAGTGGGTCGTGCCCTTGGCTGTCTGTGGTGGGCTGGCTTCACGTACACAGGCCTCCTTGCTTAGCTTGTGGCGGTCGATACGACTATCGATGATTTTACTTATTTAACTCCTAACACTATTATTTTAATCCTTGGCCTAGGTACGATTCAGGGAGGATCACTCGCTGTCACTATTGGTTTTACACCCGCGGTCCCGAGCTGGTCTAAGTCTGTCCCGTTGCTGTTACCTCCTTCACCCCTCTAACGACCCCTCCCTTCCTGCTGGCTTTGAAATGACGTTTCTCAACCCTTGTCCCCTCCTCCTCCCTCTCACAACCTTTCCCTTTCATGTCTGAGAAGGTTATAAACACGACGGGTTTCGCCGGGTTTGATAGATAAAGCAAGGAAGCGCATCGTCGTTTGTTTGTCAGGTGCGATTTGATTGATTGTAGGGCCATTCAGCTTTGGGTTTGCTTCCCAATATATAAAATACAATACCAGGCTGAGGTGAAGCAATATACCTTTGACCGCACTCTATAGTTTCTCATCTTTTCCTTTCAAAACCCCATCCACCTGCATTCCGCTCCTCTGTTGTTCTTGCTGCTGCTGCTTGGTGTTGAATCAGTAGGTTGCCATGGCTGCTGCTTGCCTTAACACACACTCGTTGTTCTTCTTCATCACACTAGTTTCCATGGCCGCCAAAGTGTAATCAAAATCCAAAGCAAAACGTTTGGATTTTTGCTTCCAATCCACGAGGGGCCGCCCCACAAATATCTGTGCACCCACCCTTTGGTATTGGTGTTCGCCTTGGCATTCGCATATACACACCTCTGAGTGTCGTAAGTAGTGCAGTGTTTGTGTTACTGTGTTGTGTTGAGTTGAGGATCCATCCATCCATCCGATTCCGAAGGATGGGGTCGGTGAACAATTGGCTAGGGTTCTCACTTTCCCCCAATATGACGGTGGAGTTGCAGGATTCGAGCCAGTCGCAATCGGCGTCGGCTGTGACGGTGGCAACCAGCAGTATGGTGCATTCCAGTGTGGCTGACCCGGGCAATATGAACATAGGGTTCGGGAGCAGCAGAGATTGCTTTTCTCATAATGCTCCCCCACGCCTCCTATGCACATGCATATTCCTCCAGAAATGACTCTCAGGTCTGATGGCTCGCTCTACATTCTGGACTCCATCAACCGGTCCCAAAACGAAGATTGGCATCTCAAGAACCTGGAGCAAACGAGGAGCATGCAAGATGCTGCTGAGTCCCAGCAACATTTGATCAGCGCGGATCTTTCAATGTTGGTTGGAGGCAGAAGTGATCACATGTGTTCCGATTCTCGTTATGATCACGGCATGATCTGCCAGAGTACTAGTAACAATAATAGGCGGCATGATGGTGAAGGCCCCAAACTTGAGGATTTTCTCGGCGGCGCTTCTCTGGGGAGGGGGCGGGCAGTACTCGGAGAGCAGAACCAGCGAGATCTCACAGCAGCCACCTGGTGCTAACCTAAACGACATGTATGGCACCGCGGCGCCGTCTTTCAATGATGGCGACATCAAGTCGAGTTTCATGTCCGATTCTGCTCGGCTTAATTGCTTCCACGCTTTCGACATTGCGGACTCCGAATTGTCGGCCACTAATTCTTCCAAGCGTTCTGACGATCAGCACAGCATCAAGGCTGAATCCTTGTCTGGTGTCAGTGCCATACACAGCTTGAATCTCCGTGATTCATATGACCACAACACCAATGAATACATTTTCCCTGAGTGCACTTTGCAACTCCCACAAACATCTGGTGTCAACAATAATAATATCAATGGGCTTTCTATGATCAAAACATGGCTGAGGACCCAACCCACTTCTTCATCTGCAGAGAGCAAGATGACTAATACAGTCAATACCAATTATGGTAATGCAGCTTCATGTTCAACTATCACAACTACTACTACTACAAATCCTGAGCAGCAGCCCAAAGAGGGCATGGATGCACTCACAAATATTCAATCTTTGAAACTCTCCATGAGTCCAACTTCTCAGTCCACCACTTCATTAGCCATTGTTCCAGCTGCCACAACTCAGAATGGTACCCTAGAGACCTCTTTGTCTGATAGCAAGAAACGTCTCATCCCAGAGAAACCCACTACTTCAGAACCCGCTATAAGAAAATCCATAGATACATTTGGACAGCGGACTTCAATATATCGTGGAGTCACCAGGCATAGGTGGACGGGGCGTTATGAAGCTCATTTATGGGATAACAGTTGCAGAAGAGAAGGCCAGACACGCAAGGGCAGGCAAGTGTATTTAGGTGGATATGACAAAGAAGAGAAGGCAGCGAGAGCATACGATCTTGCAGCTCTGAAATACTGGGGTCCAACCACCACCACCAATTTCCCTATCAGCAATTATGAGAAAGAACTGGAGGAAATGAAACACATGACAAGGCAAGAATACGTTGCATCTCTGAGAAGAAAGAGCAGTGGATTCTCTAGAGGTGCATCAATGTACCGTGGAGTAACAAGACATCATCAGCATGGAAGGTGGCAAGCAAGAATTGGAAGAGTTGCTGGCAACAAAGATCTATATCTAGGAACATTCAGTACCCAAGAAGAGGCAGCCGAAGCTTATGACATCGCTGCCATAAAATTCAGAGGTCTGAATGCTGTGACAAACTTCGATATGAGTAGGTATGATGTTAAAAGCATACTTGCTAGCAGCACATTGCCCGTGGGAGGACATGTTAAGCGCATAAAAGAAGCCGAGCCATCAGATCCAAGTGTGGATGGACGCCGCAATGACGAAGACAGCAGTACATTAAGTTCATATGCAACCAGCACTTACAGCAATGCTACTAATTCCAAAACAGGCCATGAATGGCCATTGATTGCATTTCAAAACCATGCAAACCAGCAGGAGGGGGGTGTGGTGACAAACAAGAAGTG

Ace file of the UniGene sp_v1.1_unigene24524

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein AINTEGUMENTA, putative n=1 Tax=Ricinus communis RepID=B9RM33_RICCO	-	-	55%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	62%
Blast2go	ap2 domain-containing transcription factor	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	0.0	70%
Blast2go	DNA-binding, integrase-type	IPR016177	-	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Distance to subject end: 185 aas, your sequence is shorter than subject: 517 - 606

Fln protein: MMVKAPNLRIFSAALLWGGGGQYSESRTSEISQQPPGANLNDMYGTAAPSFNDGDIKSSFMSDSARLNCFHAFDIADSELSATNSSKRSDDQHSIKAESLSGVSAIHSLNLRDSYDHNTNEYIFPECTLQLPQTSGVNNNNINGLSMIKTWLRTQPTSSSAESKMTNTVNTNYGNAASCSTITTTTTTNPEQQPKEGMDALTNIQSLKLSMSPTSQSTTSLAIVPAATTQNGTLETSLSDSKKRLIPEKPTTSEPAIRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILASSTLPVGGHVKRIKEAEPSDPSVDGRRNDEDSSTLSSYATSTYSNATNSKTGHEWPLIAFQNHANQQEGGVVTNKK

Protein Length: 518

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCAGATTACACGTCCGCGTTTGAATTCCCCGCATGTTGGTCATTCTTGTCCCCCTCTTTACCGTGATACCAGTGGGTCGTGCCCTTGGCTGTCTGTGGTGGGCTGGCTTCACGTACACAGGCCTCCTTGCTTAGCTTGTGGCGGTCGATACGACTATCGATGATTTTACTTATTTAACTCCTAACACTATTATTTTAATCCTTGGCCTAGGTACGATTCAGGGAGGATCACTCGCTGTCACTATTGGTTTTACACCCGCGGTCCCGAGCTGGTCTAAGTCTGTCCCGTTGCTGTTACCTCCTTCACCCCTCTAACGACCCCTCCCTTCCTGCTGGCTTTGAAATGACGTTTCTCAACCCTTGTCCCCTCCTCCTCCCTCTCACAACCTTTCCCTTTCATGTCTGAGAAGGTTATAAACACGACGGGTTTCGCCGGGTTTGATAGATAAAGCAAGGAAGCGCATCGTCGTTTGTTTGTCAGGTGCGATTTGATTGATTGTAGGGCCATTCAGCTTTGGGTTTGCTTCCCAATATATAAAATACAATACCAGGCTGAGGTGAAGCAATATACCTTTGACCGCACTCTATAGTTTCTCATCTTTTCCTTTCAAAACCCCATCCACCTGCATTCCGCTCCTCTGTTGTTCTTGCTGCTGCTGCTTGGTGTTGAATCAGTAGGTTGCCATGGCTGCTGCTTGCCTTAACACACACTCGTTGTTCTTCTTCATCACACTAGTTTCCATGGCCGCCAAAGTGTAATCAAAATCCAAAGCAAAACGTTTGGATTTTTGCTTCCAATCCACGAGGGGCCGCCCCACAAATATCTGTGCACCCACCCTTTGGTATTGGTGTTCGCCTTGGCATTCGCATATACACACCTCTGAGTGTCGTAAGTAGTGCAGTGTTTGTGTTACTGTGTTGTGTTGAGTTGAGGATCCATCCATCCATCCGATTCCGAAGGATGGGGTCGGTGAACAATTGGCTAGGGTTCTCACTTTCCCCCAATATGACGGTGGAGTTGCAGGATTCGAGCCAGTCGCAATCGGCGTCGGCTGTGACGGTGGCAACCAGCAGTATGGTGCATTCCAGTGTGGCTGACCCGGGCAATATGAACATAGGGTTCGGGAGCAGCAGAGATTGCTTTTCTCATAATGCTCCCCCACGCCTCCTATGCACATGCATATTCCTCCAGAAATGACTCTCAGGTCTGATGGCTCGCTCTACATTCTGGACTCCATCAACCGGTCCCAAAACGAAGATTGGCATCTCAAGAACCTGGAGCAAACGAGGAGCATGCAAGATGCTGCTGAGTCCCAGCAACATTTGATCAGCGCGGATCTTTCAATGTTGGTTGGAGGCAGAAGTGATCACATGTGTTCCGATTCTCGTTATGATCACGGCATGATCTGCCAGAGTACTAGTAACAATAATAGGCGGC_-_ATGATGGTGAAGGCCCCAAACTTGAGGATTTTCTCGGCGGCGCTTCTCTGGGGAGGGGGCGGGCAGTACTCGGAGAGCAGAACCAGCGAGATCTCACAGCAGCCACCTGGTGCTAACCTAAACGACATGTATGGCACCGCGGCGCCGTCTTTCAATGATGGCGACATCAAGTCGAGTTTCATGTCCGATTCTGCTCGGCTTAATTGCTTCCACGCTTTCGACATTGCGGACTCCGAATTGTCGGCCACTAATTCTTCCAAGCGTTCTGACGATCAGCACAGCATCAAGGCTGAATCCTTGTCTGGTGTCAGTGCCATACACAGCTTGAATCTCCGTGATTCATATGACCACAACACCAATGAATACATTTTCCCTGAGTGCACTTTGCAACTCCCACAAACATCTGGTGTCAACAATAATAATATCAATGGGCTTTCTATGATCAAAACATGGCTGAGGACCCAACCCACTTCTTCATCTGCAGAGAGCAAGATGACTAATACAGTCAATACCAATTATGGTAATGCAGCTTCATGTTCAACTATCACAACTACTACTACTACAAATCCTGAGCAGCAGCCCAAAGAGGGCATGGATGCACTCACAAATATTCAATCTTTGAAACTCTCCATGAGTCCAACTTCTCAGTCCACCACTTCATTAGCCATTGTTCCAGCTGCCACAACTCAGAATGGTACCCTAGAGACCTCTTTGTCTGATAGCAAGAAACGTCTCATCCCAGAGAAACCCACTACTTCAGAACCCGCTATAAGAAAATCCATAGATACATTTGGACAGCGGACTTCAATATATCGTGGAGTCACCAGGCATAGGTGGACGGGGCGTTATGAAGCTCATTTATGGGATAACAGTTGCAGAAGAGAAGGCCAGACACGCAAGGGCAGGCAAGTGTATTTAGGTGGATATGACAAAGAAGAGAAGGCAGCGAGAGCATACGATCTTGCAGCTCTGAAATACTGGGGTCCAACCACCACCACCAATTTCCCTATCAGCAATTATGAGAAAGAACTGGAGGAAATGAAACACATGACAAGGCAAGAATACGTTGCATCTCTGAGAAGAAAGAGCAGTGGATTCTCTAGAGGTGCATCAATGTACCGTGGAGTAACAAGACATCATCAGCATGGAAGGTGGCAAGCAAGAATTGGAAGAGTTGCTGGCAACAAAGATCTATATCTAGGAACATTCAGTACCCAAGAAGAGGCAGCCGAAGCTTATGACATCGCTGCCATAAAATTCAGAGGTCTGAATGCTGTGACAAACTTCGATATGAGTAGGTATGATGTTAAAAGCATACTTGCTAGCAGCACATTGCCCGTGGGAGGACATGTTAAGCGCATAAAAGAAGCCGAGCCATCAGATCCAAGTGTGGATGGACGCCGCAATGACGAAGACAGCAGTACATTAAGTTCATATGCAACCAGCACTTACAGCAATGCTACTAATTCCAAAACAGGCCATGAATGGCCATTGATTGCATTTCAAAACCATGCAAACCAGCAGGAGGGGGGTGTGGTGACAAACAAGAAGTG

Fln Alignment:

sp_v1.1_unigene24524___DHNTNEYIFPECTLQLPQTSGVNNNNINGLSMIKTWLRTQPTSSSAESKMTNTVNTNYGNAASCSXXXXXXXXNPEQQPKEGMDALTNIQSLKLSMSPTSQSTTSLAIVPAATTQNGTLETSLSDSKKRLIPEKPTTSEPAIRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVKSILASSTLPVGGHVKRIKEAE-PSDPSVD
Q76H96_______________DPNSNDTMFADCSLQLPPGSGMV-----GLSALKTWLRQNPSNADHHK----VVPSGSGSPGKSNLGG----------------GLGDFQSLTLSMSPGSQNSSAIISQPTIIDQCTPVET------KKRGAGKAGTKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTHINFPLETYEKEIEEMKNMTRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEPSGD

SNPs (tot: 119)

Position	A %	C %	G %	T %	Probability
174	75			25	0.996473
175		25		75	0.996473
176	75		25		0.996473
177		75		25	0.996473
181		25		75	0.996473
182	75			25	0.996473
184		75	25		0.996473
186	80	20			0.995493
189	80			20	0.995493
190		20		80	0.995493
191	20			80	0.995493
192		20		80	0.995493
194	80	20			0.995493
195	20	80			0.995493
224	87	12			0.992554
225			12	87	0.992554
226		87		12	0.992554
228			12	87	0.992554
231	12		87		0.992554
235	87			12	0.992554
242	87			12	0.992554
243			12	87	0.992554
247		12	87		0.992554
248			87	12	0.992554
249		12	87		0.992554
300	12	87			0.992554
406		14		85	0.993533
408	83		16		0.994512
409		83		16	0.994512
410	80			20	0.995493
411	80	20			0.995493
412		80	20		0.995493
414	20			80	0.995493
415			20	80	0.995493
417		80	20		0.995493
418	20	80			0.995493
419		80	20		0.995493
421			20	80	0.995493
422	20			80	0.995493
425			20	80	0.995493
427		20		80	0.995493
646		76	23		1.0
647	76			23	1.0
649		76	23		1.0
653	76	23			1.0
656		76	15		0.999983
658			84	15	0.999986
659		84	15		0.999986
665	15			84	0.999986
844	88	4			0.999262
846	92			8	0.999718
879		70	29		1.0
1027	14	85			0.993533
1204		28	71		1.0
1205	28	71			1.0
1216	85	14			0.993533
1218	85			14	0.993533
1219	85	14			0.993533
1220	85		14		0.993533
1229	85			14	0.993533
1238		14	85		0.993533
1239	14		85		0.993533
1244	11	77			0.968132
1250	88	11			0.923564
1256		11	88		0.923564
1613			33	66	0.997452
1616	25	50	25		0.995533
1618	50	25		25	0.995533
1619		16	16	66	0.988813
1621	83			16	0.994512
1622		14		85	0.993533
1624			85	14	0.993533
1628	85			14	0.993533
1630	85	14			0.993533
1631		14		14	0.984337
1633		85	14		0.993533
1634	85	14			0.993533
1635	85			14	0.993533
1641		14	85		0.993533
1643	14			85	0.993533
1673			12	87	0.992554
1676		87	12		0.992554
1683			12	87	0.992554
1686	87			12	0.992554
1689		12		87	0.992554
1694	12		87		0.992554
1764		11		88	0.923564
1770	11		88		0.923564
1771		11		88	0.923564
1772		11	88		0.923564
1774		88		11	0.923564
1775	88		11		0.923564
1779		88		11	0.923564
1782		11		88	0.923564
1783	88			11	0.923564
1940			10	90	0.90298
1944		90	10		0.90298
1947		90	10		0.90298
1948	90			10	0.90298
1951		11	88		0.923564
1958	87		12		0.992554
1960		11	88		0.923564
1963			11	88	0.923564
1965	88	11			0.923564
1966			11	88	0.923564
2351	11		88		0.923564
2524	85			14	0.993533
2527	85			14	0.993533
2528		14		85	0.993533
2575	85		14		0.993533
2579	85		14		0.993533
2586			85	14	0.993533
2590	85			14	0.993533
2593	85	14			0.993533
2597	85			14	0.993533
2598		14	85		0.993533
2667		16	83		0.994512
2670		83		16	0.994512
2671	83			16	0.994512

SSRs (tot: 4)

Start position	End position	Sequence	Length
674	686	TGC TGC TGC TGC T	13
960	975	ATCC ATCC ATCC ATCC	16
2013	2026	ACT ACT ACT ACT AC	14
2451	2463	ACC ACC ACC ACC A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain