SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24521

Length: 1303 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24521

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L8-1 n=27 Tax=Spermatophyta RepID=RL81_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	60s ribosomal protein l2	-	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT38

Fln msg:

Fln protein: MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLLRVTFRHPFRYRHQKELYIAAEGMYTGQFIYCGKKANLTVGNVLPLKSIPEGAIVCNVEQHVGDRGSFARASGDYAIVVSHNFDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAASAAAKTDKTS*

Protein Length: 263

Fln nts: TCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGTTCTCGCGTTAGGGTTTTTCTGTATCGGGGGAGGGAGGGTTGTAGAGGAAACTCTAGTAGTGTAGTGTAGCA_-_ATGGGAAGAGTGATCAGAGCACAGAGGAAGGGAGCGGGTTCGGTGTTCAGATCCCACACGCATCACAGGAAGGGACCTGCACGCTTTCGCAGCCTCGACTATGGGGAGCGCAATGGCTACATCAAGGGCATTGTCTCCGATGTTATTCATGACCCAGGGCGAGGTGCCCCGCTTTTGAGGGTGACTTTCAGGCATCCCTTCCGCTATAGGCACCAGAAGGAACTTTACATCGCAGCCGAGGGTATGTATACGGGCCAGTTCATTTATTGCGGTAAGAAGGCCAATCTCACCGTGGGCAACGTGCTGCCTCTCAAATCTATTCCTGAGGGAGCTATCGTCTGCAATGTGGAGCAACATGTCGGAGACCGTGGTTCGTTTGCCCGAGCTTCGGGAGACTACGCTATCGTCGTCAGTCACAACTTTGATAATGGCACTAGCAGGATCAAGCTACCTTCTGGAGCCAAGAAAATAGTGCCGAGCAGTTGCAGAGCAATGATTGGTCAAGTTGCTGGTGGTGGAAGGACTGAAAAGCCCATGCTCAAGGCTGGAAATGCATACCATAAGTACAGAGTCAAGAGAAATAGCTGGCCTAAGGTTCGTGGTGTGGCTATGAACCCAGTTGAACATCCTCATGGTGGTGGTAACCATCAGCATATTGGTCATGCCAGTACTGTGCGCCGTGATGCACCACCTGGGCAGAAAGTTGGTCTTATTGCTGCAAGAAGAACTGGTCGTTTACGTGGACAAGCTGCATCAGCTGCTGCAAAGACCGACAAAACCAGTTAG___TGTGTTCCTCGTCTGTTATTAGGTGGAAGAGGTGTTGTTTATGCCGTATGTGTATTTGGACATTTTGGTATGTTCACAAACAAGAGTAAGATTTATTGCCACTCAGATTTGTCCTTTGTGGGACTGAAATTCCGAGTATTTCTTTGTTTACTGAAGTTTTGTTCAAGAATTTTGTTTGGTGAACATTTTTAGATCACTGGTTTAAGCGTCAACATTTGTAGGATGATAGAACCTAGGCCGGCCCTTGCTATTACAATGAGGAAAGATACATTTCTTTGTCGCTCAGTGTTATATTCAGTTGGGTAATTACATCTATGTTTCCATTTTATATTTTGGCTTGTAAGAATTTTCTGGTTTGTTAAGTATAGTCCACGCATGTGC

Fln Alignment:

sp_v1.1_unigene24521___MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLLRVTFRHPFRYRHQKELYIAAEGMYTGQFIYCGKKANLTVGNVLPLKSIPEGAIVCNVEQHVGDRGSFARASGDYAIVVSHNFDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQ
C0PT38_______________MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLCKVTFRHPFRYRHQKELFVAAEGMYTGQFVYCGKKANLIVGNVLPLRSIPEGAIVCNVEQHVGDRGSFARASGDYAIVVSHNFDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
193		88	11		0.923564
194	88			11	0.923564
198			88	11	0.923564
1134		93		6	0.999153
1248	23			7	1.0
1249	15			84	0.999986
1253	88			11	0.923564
1254	22	11		66	0.999999
1256	14			85	0.993533
1257	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain