SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24516

Length: 280 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

>sp_v1.1_unigene24516
ATTGGGGTGTGCGGAAGGATAGAAGAATATCGTATCGGTGTCTTTCTGTTCTTCTGCCTCCTCTGTGCGTGAAGTTTCTCTGAAGTTCGTGACCTCGCTTAGGATCTGCAGCAGCGCATCGCCTTTTGAGGTTAAGCTTGGAGTAAGGAAGAAAAGCGAAGACAAATTTGTCCATCCTCTTGTGCATGTGCGCATACAGCAGCGCAACGGTAGAAAGAGTCTGACAACTGTGCAAGGTTTAAGGAAGGAATTTAGCTACAACAAAATTCTCAAAGACCTC

Ace file of the UniGene sp_v1.1_unigene24516

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein translation factor SUI1 homolog n=13 Tax=Magnoliophyta RepID=SUI1_ORYSJ	-	-	5.0e-10	96%
FL-Next	tr=Putative translation factor; Pinus pinaster (Maritime pine).	-	-	0.0	100%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8RVJ0

Fln msg: Distance to subject end: 50 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 86 - 113

Fln protein: KNIVSVSFCSSASSVREVSLKFVTSLRICSSASPFEVKLGVRKKSEDKFVHPLVHVRIQQRNGRKSLTTVQGLRKEFSYNKILKDL

Protein Length: 87

Fln nts: ATTGGGGTGTGCGGAAGGATAGAAGAATATCGTATCGGTGTCTTTCTGTTCTTCTGCCTCCTCTGTGCGTGAAGTTTCTCTGAAGTTCGTGACCTCGCTTAGGATCTGCAGCAGCGCATCGCCTTTTGAGGTTAAGCTTGGAGTAAGGAAGAAAAGCGAAGACAAATTTGTCCATCCTCTTGTGCATGTGCGCATACAGCAGCGCAACGGTAGAAAGAGTCTGACAACTGTGCAAGGTTTAAGGAAGGAATTTAGCTACAACAAAATTCTCAAAGACCTC

Fln Alignment:

sp_v1.1_unigene24516___VHVRIQQRNGRKSLTTVQGLRKEFSYNKILKDL
Q8RVJ0_______________VHVRIQQRNGRKSLTTVQGLRKEFSYNKILKDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain