SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24486

Length: 1263 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24486

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L15-1 n=22 Tax=Embryophyta RepID=RL15A_PICMA	-	-	85%
FL-Next	sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L15e	IPR000439	-	94%
Blast2go	Ribosomal protein L23/L15e core domain	IPR012678	-	94%
Blast2go	Ribosomal protein L15e, conserved site	IPR020925	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ28

Fln msg:

Fln protein: MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITRPTRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVILVDQAHKVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR*

Protein Length: 206

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATAGATATTTAGGGTTTCGCGTGAACTTGGCTCTATTGTTTTGAGAAGTGGGAGCATCGGCGGAGAGGGCGCAGACAGAGACTCAGAGGTAGCAGGGGATTTGAGCAATCCATCC_-_ATGGGTGCGTATAAGTACATAGAGGAGTTATGGAAGAAGAAGCAATCGGATGTGATGAGATTTCTGCAGAGGGTCAGGTGTTGGGAGTACAGGCAGCTCCCCGGCATTGTGAGGATTACTCGCCCAACTCGTCCCGATAAGGCACGCCGTCTTGGATATAAGGCCAAACAGGGTTATGTTGTTTACCGCATACGAGTAAGGCGTGGTGGGCGGAAGAGGCCAGTGCCCAAAGGTATTGTTTACGGGAAGCCCAAGAATCAGGGTATTACCCAACTCAAGTTCCAGCGTAGCTTGAGATCCGTGGCAGAAGAGAGAGCCGGACGAAAGCTGGGAGGATTGAGAGTTTTGAACTCTTACTGGATCAACCAGGACTCCACCTACAAGTATTATGAAGTGATCCTGGTTGACCAGGCACACAAGGTAATACGAAATGATCCTCGAATCAACTGGATCTGTAATGCAGTTCACAAGCACAGAGAGCTTCGTGGACTTACATCAGCTGGAAAGAAGTACAGGGGTCTCCGAGGACGGGGCCATCTGTACCACAAGGCTCGTCCTTCCAAACGTGCTACATGGAAAAGAAACAATACTCTATCTCTCCGGCGTTATCGATAG___ATTCTTGGGTAGCATCTATAATAGCTTTGCATTCAAAACTTATATTGTTTCATTTGTCGGCAGCATACTGTTTTGTTATTCTAGAGAAACAACTGGTGGTTTAGTTTATTTCTAAATGGACGTAATTTTTGAGTCTGCGCTCTTACTGTTTCTGCAATTGAAACATGCGAGAAATTGAAATTGTTGATCTTTTAGAGTTTCTGATTGGATCTAGTCTTCTTGAAAGAGTTGATTCTATCAAATTGAGTCAGGGCAGGTATTTGTGTCTTCAATTTTTCGGCTGATATCTATATTCTGTTGTCCCATATAATTGAGAGGGATTGAAGTGGAACATATATGTGCTTATTACCTTTGTTTAACTGCAATAAATAGAGGTCCACTTAATGCCAAGTTATTAAAGTTGCTTGAAATGTATTTTTTCATGTTATGGCATTCGTGGCAGATTAGGCTTCAGTATTTATTCAATTGTTAAAATAATAGACAATATTCGGACGATAGATTTCTGG

Fln Alignment:

sp_v1.1_unigene24486___MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXXVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVILVDQAHKVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR
A9NZ28_______________MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
229	25		75		0.996473
465			80	20	0.995493
466	80			20	0.995493
469	80	20			0.995493
471	80		20		0.995493
473	20	80			0.995493
476	20		80		0.995493
477		20	80		0.995493
481	83	16			0.994512
482		16		83	0.994512
748			97	2	0.972772
1031	96			0	0.989003
1033	7			92	1.0
1147	5		95		0.997749
1154		10		90	0.999898
1158	38		61		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain