SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24476

Length: 3504 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24476
CGTCGTGACCTTGGCTGTCACTCAACTTTCTATGATTTATATATCCTTCCCTGTTAAATTACTCTTTCTTCGAATTCTATTGCATTTGCATTCTTGGCATTTTCCGCCATCGCGAGTGTTAAATTTCAACCACATCGGTGAAATTCTGAGCTGTGAACGGGCTCTCGTTATTTTTTCTGTTTGGCTCAGATCTATCAGATTCCGCAAGTTTTATGTGATTTAGCGGGGGTTTTAACGTTACAGAAGGATCCACAGTCTCACACTTTGACGCCATGCCTCTCCGACTTGAAATCAAGAGGAAACTTGCCCAAAGGTCTGAACGTGTAAAGTCTGTAGATCTTCATCCTACGGAGCCATGGATGCTTGCAAGTCTTTATTCTGGCAGCGTTTGTATATGGAATTACCAGACACAGACTTTGGCAAAGTCTTTCGAAGTCACGGAACTTCCAGTGCGGTCTGCCAAGTTCATAGCACGCAAACAATGGGTTGTAGCTGGTGCAGATGACATGATTATCCGTGTTTACAATTATAACACCATGGATAAGGTGAAAGTATTTGAAGCACATACTGATTATATCAGGTGTGTGAGTGTTCATCCAACTCTACCATATGTGCTGTCATCATCTGATGACATGCTAATCAAGCTTTGGGACTGGGATAAAGGTTGGCAATGTACTCAAATATTTGAAGGTCATTCACACTATGTGATGCAAGTTGCGTTTAATCCCAAGGATACAAATACATTTGCAAGTGCCTCTCTAGACCGTACTATAAAGATCTGGAATCTTGGCTCACAAGAACCAAATTTTACTCTTGATGCCCATTTAAAGGGTGTAAACTGTGTTGATTACTTCACAGGAGGTGACAGACCATATCTTATTACTGGTTCAGATGATCACACAGCAAAGGTTTGGGACTACCAGACAAAAAGTTGCGTACAGACTCTGGAAGGACACACACATAATGTATCTGCAGTATGTTTTCACCCTGAACTTCCTATCATCATCACTGGTTCGGAAGATGGTACTGTTCGTATTTGGCATGCAACTACATACAGGTTGGAGAATACTCTGAACTATGGGCTGGAACGAGTCTGGGCCATTGGTTATTTGAAAAGCTCAAATCGGGTTGCTATTGGATATGATGAAGGTACAATCATGATAAAGATTGGTCGAGAAGAGCCAGTTGCTAGCATGGACAGCAGTGGGAAAATTATTTGGGCAAAGCACAATGAAATACAGACTGCGAACATTAAGGCAGTTGGAGCAGACATTGAGGTGACAGATGGGGAGAGATTCTCTTTAGGTGTGAAGGAATTGGGAAGCTGTGATCTATATCCACAGAGCTTAAAGCACAACCCAAATGGAAGATTTGTTGTGGTGTGTGGGGATGGCGAATACATTATTTATACAGCTCTTGCATGGAGAAACAGATCCTTTGGATCTGCCCTTGAGTTTGTGTGGGCATCGGATGGAGAATATGCAGTTCGGGAAAGCACTTCCAAGATTAAAATTTTCAGTAAAACATTTCAGGAGAGAAAAAGTATCAGGCCAACATTTTCAGCTGAGTCAATCTATGGTGGAGCATTGTTGGCGATATGTTCCAATGATTTTGTTTGCTTCTATGATTGGGCTGAATGTCGTGTAATTCGACGAATTGATGTTAGTGTGAAAAATGTCTATTGGGCTGACAGCGGAGATCTTCTTGCAATCACAAGTGACAATTCATTCTATATTTTGAAGTACAATCGCGAGGTTGTTTCTACATATCTGGATAGTGGCAAGCCTATTGATGAGCAGGGAGTTGAAGATGCATTTGAACTCACCCATGAGATAAATGAGCGGGTTCGGACTGGAATTTGGGTTGGGGATTGTTTCATATACAATAATTCAACATGGCGTCTTAATTATTGTGTTGGTGGTGAGGTAACTACCATGTTTCATTTGGATCGGCCCATGTATTTGTTAGGCTACCTTGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTCATTTTCTGGAGTCTCGTGGTATGCTGGATGAGGCACTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGATCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAGGGATGGCCAAACTTGCCCAACTTGCAAGAGAGCAGGGGAAGAACAATGTTACATTTCTTTGTTTATTCATGCTAGGGAAATTAGAAGAATGCATCGATCTCTTGGTGGAGAGTAATCGCATACCGGAGGCTGCTTTTATGGCACGATCCTATCTACCAAGCAAGGTTTCAGAATTGGTCTCCATTTGGCGTAATGACCTAAGTAAGGTAAATCAAAAGGCTGCCGAATCTTTAGCAGATCCAGAGGACTATCCTAACCTCTTTGAAGACTGGCATTTGGCAATTGATGTTGAATCTAGGATGGGAAGTTCAAGGAATGACTATCCTCCTGCGGAGGATTATCTAAAGTATGTTGGTAAAATGAATGTCGACCTTATAGAAGAGTTTAAAAATATGGAAGTCAATGGAGACGTCCCTTTTGAAAATGGAGATTCTGTTCACGAGGCACGAGATATCAATGAAGAGGATGTTCTTGATGAAATGCAGGACGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGGAGATTCAACTGAAGGAGAGGTTCATGTTGAAATGCAAGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGAAGATTCTACTGAAGGAGAGGTTCTTGTTAATGGAAACGAGGCAGAAGAAGAGTGGGGTATGGACAATGAAGGAAACCAGCGCGCATGAACTGCCGATAGCAAGTGTATCATTGCAATCAAACCAATTTTTCAGTCTCGTGATATAAAATGATTATTTGGATTTTGTCTAGTTGTTCTAGCATAATGCTAGGATGTGTATTTCTGGGCTTCTCATTTCAGTAACTTACAGGAAGTAAAGTGTTACAAAGTGCAACGGAATTTCAAGGATTAATGGCTTGATCAATGTTTATGGTGGACAAGTGTGAGAAACGTGCCGAATAACCAGGTTCACATATGGAAAGCTATTGGATATATCCAAGCGGTGTTCTTTTAAGATATCTTGGGTCAATCCCACTTGAATTTAAGACCACTAGATGTGTTGGTCGTGAAAAAAGTCTGGGCTATTTTAGCCAAGATAAGAATGAGTAGGGCCCGAATGTCTAGTTGTAGCTGTTCATTTC

Ace file of the UniGene sp_v1.1_unigene24476

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer beta subunit, putative (EC:2.7.11.7)	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	coatomer protein subunit beta 2 (beta prime)	-	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 940 - 314

Fln protein: MPLRLEIKRKLAQRSERVKSVDLHPTEPWMLASLYSGSVCIWNYQTQTLAKSFEVTELPVRSAKFIARKQWVVAGADDMIIRVYNYNTMDKVKVFEAHTDYIRCVSVHPTLPYVLSSSDDMLIKLWDWDKGWQCTQIFEGHSHYVMQVAFNPKDTNTFASASLDRTIKIWNLGSQEPNFTLDAHLKGVNCVDYFTGGDRPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYLKSSNRVAIGYDEGTIMIKIGREEPVASMDSSGKIIWAKHNEIQTANIKAVGADIEVTDGERFSLGVKELGSCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWASDGEYAVRESTSKIKIFSKTFQERKSIRPTFSAESIYGGALLAICSNDFVCFYDWAECRVIRRIDVSVKNVYWADSGDLLAITSDNSFYILKYNREVVSTYLDSGKPIDEQGVEDAFELTHEINERVRTGIWVGDCFIYNNSTWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVFLIDKEFNVVGYTLLLSLIEYKTLVLRGDLDRANEILPTIPKEQLNNVAHFLESRGMLDEALEVAVDPDYKFDLAIQLGRIGVAKSIAVEAQSESKWKHLGELAMSAGKLDLAEECLSHAADLSGLLLLYSALGDAEGMAKLAQLAREQGKNNVTFLCLFMLGKLEECIDLLVESNRIPEAAFMARSYLPSKVSELVSIWRNDLSKVNQKAAESLADPEDYPNLFEDWHLAIDVESRMGSSRNDYPPAEDYLKYVGKMNVDLIEEFKNMEVNGDVPFENGDSVHEARDINEEDVLDEMQDETIDGEKYVEAGDSTEGEVHVEMQDETIDGEKYVEAEDSTEGEVLVNGNEAEEEWGMDNEGNQRA*

Protein Length: 941

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTCTATGATTTATATATCCTTCCCTGTTAAATTACTCTTTCTTCGAATTCTATTGCATTTGCATTCTTGGCATTTTCCGCCATCGCGAGTGTTAAATTTCAACCACATCGGTGAAATTCTGAGCTGTGAACGGGCTCTCGTTATTTTTTCTGTTTGGCTCAGATCTATCAGATTCCGCAAGTTTTATGTGATTTAGCGGGGGTTTTAACGTTACAGAAGGATCCACAGTCTCACACTTTGACGCC_-_ATGCCTCTCCGACTTGAAATCAAGAGGAAACTTGCCCAAAGGTCTGAACGTGTAAAGTCTGTAGATCTTCATCCTACGGAGCCATGGATGCTTGCAAGTCTTTATTCTGGCAGCGTTTGTATATGGAATTACCAGACACAGACTTTGGCAAAGTCTTTCGAAGTCACGGAACTTCCAGTGCGGTCTGCCAAGTTCATAGCACGCAAACAATGGGTTGTAGCTGGTGCAGATGACATGATTATCCGTGTTTACAATTATAACACCATGGATAAGGTGAAAGTATTTGAAGCACATACTGATTATATCAGGTGTGTGAGTGTTCATCCAACTCTACCATATGTGCTGTCATCATCTGATGACATGCTAATCAAGCTTTGGGACTGGGATAAAGGTTGGCAATGTACTCAAATATTTGAAGGTCATTCACACTATGTGATGCAAGTTGCGTTTAATCCCAAGGATACAAATACATTTGCAAGTGCCTCTCTAGACCGTACTATAAAGATCTGGAATCTTGGCTCACAAGAACCAAATTTTACTCTTGATGCCCATTTAAAGGGTGTAAACTGTGTTGATTACTTCACAGGAGGTGACAGACCATATCTTATTACTGGTTCAGATGATCACACAGCAAAGGTTTGGGACTACCAGACAAAAAGTTGCGTACAGACTCTGGAAGGACACACACATAATGTATCTGCAGTATGTTTTCACCCTGAACTTCCTATCATCATCACTGGTTCGGAAGATGGTACTGTTCGTATTTGGCATGCAACTACATACAGGTTGGAGAATACTCTGAACTATGGGCTGGAACGAGTCTGGGCCATTGGTTATTTGAAAAGCTCAAATCGGGTTGCTATTGGATATGATGAAGGTACAATCATGATAAAGATTGGTCGAGAAGAGCCAGTTGCTAGCATGGACAGCAGTGGGAAAATTATTTGGGCAAAGCACAATGAAATACAGACTGCGAACATTAAGGCAGTTGGAGCAGACATTGAGGTGACAGATGGGGAGAGATTCTCTTTAGGTGTGAAGGAATTGGGAAGCTGTGATCTATATCCACAGAGCTTAAAGCACAACCCAAATGGAAGATTTGTTGTGGTGTGTGGGGATGGCGAATACATTATTTATACAGCTCTTGCATGGAGAAACAGATCCTTTGGATCTGCCCTTGAGTTTGTGTGGGCATCGGATGGAGAATATGCAGTTCGGGAAAGCACTTCCAAGATTAAAATTTTCAGTAAAACATTTCAGGAGAGAAAAAGTATCAGGCCAACATTTTCAGCTGAGTCAATCTATGGTGGAGCATTGTTGGCGATATGTTCCAATGATTTTGTTTGCTTCTATGATTGGGCTGAATGTCGTGTAATTCGACGAATTGATGTTAGTGTGAAAAATGTCTATTGGGCTGACAGCGGAGATCTTCTTGCAATCACAAGTGACAATTCATTCTATATTTTGAAGTACAATCGCGAGGTTGTTTCTACATATCTGGATAGTGGCAAGCCTATTGATGAGCAGGGAGTTGAAGATGCATTTGAACTCACCCATGAGATAAATGAGCGGGTTCGGACTGGAATTTGGGTTGGGGATTGTTTCATATACAATAATTCAACATGGCGTCTTAATTATTGTGTTGGTGGTGAGGTAACTACCATGTTTCATTTGGATCGGCCCATGTATTTGTTAGGCTACCTTGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTCATTTTCTGGAGTCTCGTGGTATGCTGGATGAGGCACTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGATCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAGGGATGGCCAAACTTGCCCAACTTGCAAGAGAGCAGGGGAAGAACAATGTTACATTTCTTTGTTTATTCATGCTAGGGAAATTAGAAGAATGCATCGATCTCTTGGTGGAGAGTAATCGCATACCGGAGGCTGCTTTTATGGCACGATCCTATCTACCAAGCAAGGTTTCAGAATTGGTCTCCATTTGGCGTAATGACCTAAGTAAGGTAAATCAAAAGGCTGCCGAATCTTTAGCAGATCCAGAGGACTATCCTAACCTCTTTGAAGACTGGCATTTGGCAATTGATGTTGAATCTAGGATGGGAAGTTCAAGGAATGACTATCCTCCTGCGGAGGATTATCTAAAGTATGTTGGTAAAATGAATGTCGACCTTATAGAAGAGTTTAAAAATATGGAAGTCAATGGAGACGTCCCTTTTGAAAATGGAGATTCTGTTCACGAGGCACGAGATATCAATGAAGAGGATGTTCTTGATGAAATGCAGGACGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGGAGATTCAACTGAAGGAGAGGTTCATGTTGAAATGCAAGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGAAGATTCTACTGAAGGAGAGGTTCTTGTTAATGGAAACGAGGCAGAAGAAGAGTGGGGTATGGACAATGAAGGAAACCAGCGCGCATGA___ACTGCCGATAGCAAGTGTATCATTGCAATCAAACCAATTTTTCAGTCTCGTGATATAAAATGATTATTTGGATTTTGTCTAGTTGTTCTAGCATAATGCTAGGATGTGTATTTCTGGGCTTCTCATTTCAGTAACTTACAGGAAGTAAAGTGTTACAAAGTGCAACGGAATTTCAAGGATTAATGGCTTGATCAATGTTTATGGTGGACAAGTGTGAGAAACGTGCCGAATAACCAGGTTCACATATGGAAAGCTATTGGATATATCCAAGCGGTGTTCTTTTAAGATATCTTGGGTCAATCCCACTTGAATTTAAGACCACTAGATGTGTTGGTCGTGAAAAAAGTCTGGGCTATTTTAGCCAAGATAAGAATGAGTAGGGCCCGAATGTCTAGTTGTAGCTGTTCATTTC

Fln Alignment:

sp_v1.1_unigene24476___EIKRKLAQRSERVKSVDLHPTEPWMLASLYSGSVCIWNYQTQTLAKSFEVTELPVRSAKFIARKQWVVAGADDMIIRVYNYNTMDKVKVFEAHTDYIRCVSVHPTLPYVLSSSDDMLIKLWDWDKGWQCTQIFEGHSHYVMQVAFNPKDTNTFASAS-------------------------------------------LDRTIKIWNLGSQEPNFTLDAHLKGVNCV-DYFTGGDRPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIW
A9NPC1_______________KLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTG-KCLKVLPAHSDPVTAVHFN-RDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
25	90			10	0.90298
26		90		10	0.90298
95			35	64	1.0
110	71		28		1.0
677		66		33	0.997452
1360		85		14	0.993533
1385		12		87	0.992554
1387		12		87	0.992554
1388	12		87		0.992554
1389	12		87		0.992554
1390		12	87		0.992554
1391		12	87		0.992554
1392	87			12	0.992554
1396		75		25	1.0
1397			87	12	0.992554
1398	87		12		0.992554
1399	87			12	0.992554
1400		12		87	0.992554
1403	87			12	0.992554
1404		12		87	0.992554
1405	12			87	0.992554
1588	83		16		0.994512
1590		16		83	0.994512
1595	16		83		0.994512
1597		16	83		0.994512
1598	83			16	0.994512
1600	83		16		0.994512
1601			16	83	0.994512
1602		16	83		0.994512
1604			16	83	0.994512
1605		83		16	0.994512
1608	83	16			0.994512
1610		16	83		0.994512
1657	87			12	0.992554
1658	87	12			0.992554
1659			12	87	0.992554
1663		12		87	0.992554
1664		12	87		0.992554
1667	87		12		0.992554
1672		12	87		0.992554
1674	87	12			0.992554
1675	87			12	0.992554
1676	87	12			0.992554
2663		66	33		0.997452
2664			33	66	0.997452
2665	66		33		0.997452
2694			25	75	0.996473
2696	75		25		0.996473
2710	25	75			0.996473
2853			88	11	0.923564
2855		88	11		0.923564
2856	88		11		0.923564
2877		11		88	0.923564
2898		87		12	0.992554
3155	87	12			0.999964
3156	81	6	12		0.999943
3158		18	81		1.0
3159	87		12		0.999964
3161			12	87	0.999964
3163	5	11		82	0.999919
3168	82	5			0.999919
3169		17	5	76	1.0
3171			11	88	0.999952
3173		11	88		0.999952
3174	11			82	0.999919
3177	88	11			0.999952
3178	11		88		0.999952
3201		9		90	0.999872
3202			90	9	0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain