SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24472

Length: 2805 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24472
CGTCGTGACCTTGGCTGTCACTCAATTATTCGCAAAATATCGAGGGCACCCGACCCCGTATGGGTAATTCGGAATCCAAAACCTTCAGAGTCGCATTACATAAAAAAATATCAGAAATAAAATCTCGTCGTGACCTTGGCTGTCACTCACCTTTTAAAGCTCACGCAGTAAGCTTGATGTTATTCTAGTTTCTTAAAACCCTAAGAAGGGTTTTGCGACATATTGTTCGTTCTGGTATTATTTATTTGCATTATTTTTTGTGCCGAATCGAAGTTGAGTGACTGCGGACTGGTCACTAGCTTCTGAAACTCGAACCCTCAAGTTTTAACTAACGACGACGTCGGCGGGTTTTTGAGGTTTTCTGCTTCCACCAAGGTGATTCGATTGTCCTGTCTAGAGTGTAATAACGATGGGGAAGTCTAACAAGAAATCCAATGTTAAGGTTGCCGCCGTTACTCCAACTATTCCCTTGGTGCAAGGGAAGAAAGCCAAGCGGCAGCCAGAATCTGAAGTTGGGATTCAGCCACTACATAAGAAATTAAAGTCTGCTACTAGAGTACCGCAAAAGAAGAAAAATGAGACATCTCCTTCATCTGAGGAAGCTTCCGAGTCAGAGGAAGAGGTCATACTTCCTGTAAGCAAAAAACCTAATTTGGCAAAGAAAATTCCAGCAAAAGGTAGTAGCAGCGAGGAGGATTTGTCAGATGAGGAACCTGGAATAGAACTGGTTGCCGCGGCTAAGAAGAGCCCGAAGTTGGCAAACAATGGTTCAATTTCAGCTATAAGGAATGGTAAAGCAGAACCAACTGATGATTCAGAGAGTGATTCTGAAGAAGAAAAGGTAAAGAAGCCTTTGCAAACAAAGGGTGCAGAGAAAATTGGTTTTTTCAAAGGGAAACTGATGGAAGAAAGCAGTGATGATGATGATGACAGCGAGGATGAGCCTTCTGATGAGGGATCTGACAGTGAAGAATCTGAAGAGGAGATAACTGTTCAGAAGGGGATAAAGAACCAACAACCAGCAAAAATTGTGGAGGAAGAGAGCAATGAAGAGGACAGCGCAGGTGAAAGGGATGATGAACCAAAGGCCAAGCGACAGAATGTCCAGGTAAAAAAGAACCAACAACCAGCAAAAATTGCAAAGGATGAGAGCAGTGAAGAGGATAGCTCAGACGAGAGTGATGATGAACCAAAGGCCAAACAACAGAGAGTTCAGGCATCTAAGATTCGACAAACATCAAAAGCCACAGAGGATGAGAGCGAAGGCGAGGACATCTCTGATGACAGTGAGGATGACGATCTAAATGAGAGTGATGATGAACCAAAGAAGAAGCAGAGTGTCAAGGCTTCTACGCCAAAGACACCAAAGACGCCAGCAACTCCTGGATCGAAGACACTTTTTGTAGGAAACCTGTCCTTTTCTGTTGATCCAGACATCATTATTGAATTTTTCCAAGATGCTGGAGAGGTGGCTGATGTTCGGCTGGGTACAAAGGATGATGGTTCCTACAAAGGTTATGGACATGTGGAATTTGTAACCGAAGAAGCAGCTTCGAAGGCATTGGAGAAAAATGGGCAGGATTTGCTTGGTCGTCCTGTCAGACTTGATTTTGCCACGGAGCGTGGTGCTCCTGGATCGAAACCGGATTTCAAGTCCAGGGATAACCAGGAACAGAAATCTGGCTGTACTGTATTTGTTAGGGGATTTGACAAGAATCAAGAGGAGGATGATATTCGAAATAGCTTGTCAGAGCATTTCGATGATTGCGGAATCATTGACAACATTCGAATTCCCAAGGACTACGAGTCAGGAACCTTCAAGGGGTTCGCTTATGTTGAATTCAAGGATAGTGCTTCACTATCAAAGGCACTGGCGTTGGGTTCTGACGAGTTGTCTGTCGAAGAAGCAAGGAGTGGGGGACGTGATGGAGGTGGCAGAGGCGGTGGCCGAAGAGGAGGCAGAGGCGGTGGCAGAGGTTTTAGGGATGGAGGTGGTAGATTCTCTGGAGGACGAGGCCGCGGTGGTGGTCGTGGCACCCCTCGCGGTCGTGGTCGTGGAGATCGCAATGGGGGTCGCGGAACTCCAAAGTTCAATATGGCTCCATCTGGTAAAAAGACTACCTTTGGATTTGGAGATGATTGAAAAAAATGAGTGCATCAGTTTGTAGTTTCATCAAATAGCAAGAATGTAGTTTCATCAAATATCAAGAACTATCGCCCATCCTTGGGACGTATGTGTATAGTATTCTGAATGCCAACTAGAATACTTACCACTGTTAGCTTTAAATTTTGTTAGTCAAAGAGCAGCATTGTCGAATCAATGCAAAAAAAATCCCATTTTTATTTGTTGAAAGCTTTTAGTTTCATCTTCTACGTCAGTTTTGGTTGTCTTTTAAGATTTTTATCAGCCATAGTTTCAATGCCGGCACAATATTCATTGCAGTTGAGAACGCGTGCTAATGAGGTAGGGTTTACATGTTACCATACAATTTGTATGTAAGTAAATCAAAGAGTATTTTAACTTCTGGTGCTCCTACATAGTCAGATTGTATCTCTTTTGTAAAAGAAGTCATATGATGCCCTCTCTGGATATATGGTTTAAAGATTTGTGATGCACATTAAATGTTTTGTAATGATTAATCATATTCTTTTGCTTCTCTTTGCTTTGGGGTGGATTCATATTATTGAAATTTATATTGTGATGTCTTTGACATACGGGGATCCGTATTCATTGCCCACCAATCTAGCGAAAGGGATGTAAAATCGAATCTCTATGGATTTGTTAATTTATGTTACTTTGAATTG

Ace file of the UniGene sp_v1.1_unigene24472

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleic acid binding protein, putative; K11294 nucleolin	-	-	5.0e-37	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	nucleic acid binding	-	-	9.83712e-43	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	9.83712e-43	67%
Blast2go	sepal vascular tissue pattern formation	GO:0080057	Biological Process	9.83712e-43	67%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	9.83712e-43	67%
Blast2go	root development	GO:0048364	Biological Process	9.83712e-43	67%
Blast2go	endonucleolytic cleavage involved in rRNA processing	GO:0000478	Biological Process	9.83712e-43	67%
Blast2go	leaf development	GO:0048366	Biological Process	9.83712e-43	67%
Blast2go	petal vascular tissue pattern formation	GO:0080056	Biological Process	9.83712e-43	67%
Blast2go	nucleolus	GO:0005730	Cellular Component	9.83712e-43	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWK5

Fln msg: your sequence is longer than subject: 578 - 290

Fln protein: MGKSNKKSNVKVAAVTPTIPLVQGKKAKRQPESEVGIQPLHKKLKSATRVPQKKKNETSPSSEEASESEEEVILPVSKKPNLAKKIPAKGSSSEEDLSDEEPGIELVAAAKKSPKLANNGSISAIRNGKAEPTDDSESDSEEEKVKKPLQTKGAEKIGFFKGKLMEESSDDDDDSEDEPSDEGSDSEESEEEITVQKGIKNQQPAKIVEEESNEEDSAGERDDEPKAKRQNVQVKKNQQPAKIAKDESSEEDSSDESDDEPKAKQQRVQASKIRQTSKATEDESEGEDISDDSEDDDLNESDDEPKKKQSVKASTPKTPKTPATPGSKTLFVGNLSFSVDPDIIIEFFQDAGEVADVRLGTKDDGSYKGYGHVEFVTEEAASKALEKNGQDLLGRPVRLDFATERGAPGSKPDFKSRDNQEQKSGCTVFVRGFDKNQEEDDIRNSLSEHFDDCGIIDNIRIPKDYESGTFKGFAYVEFKDSASLSKALALGSDELSVEEARSGGRDGGGRGGGRRGGRGGGRGFRDGGGRFSGGRGRGGGRGTPRGRGRGDRNGGRGTPKFNMAPSGKKTTFGFGDD*

Protein Length: 579

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTCGCAAAATATCGAGGGCACCCGACCCCGTATGGGTAATTCGGAATCCAAAACCTTCAGAGTCGCATTACATAAAAAAATATCAGAAATAAAATCTCGTCGTGACCTTGGCTGTCACTCACCTTTTAAAGCTCACGCAGTAAGCTTGATGTTATTCTAGTTTCTTAAAACCCTAAGAAGGGTTTTGCGACATATTGTTCGTTCTGGTATTATTTATTTGCATTATTTTTTGTGCCGAATCGAAGTTGAGTGACTGCGGACTGGTCACTAGCTTCTGAAACTCGAACCCTCAAGTTTTAACTAACGACGACGTCGGCGGGTTTTTGAGGTTTTCTGCTTCCACCAAGGTGATTCGATTGTCCTGTCTAGAGTGTAATAACG_-_ATGGGGAAGTCTAACAAGAAATCCAATGTTAAGGTTGCCGCCGTTACTCCAACTATTCCCTTGGTGCAAGGGAAGAAAGCCAAGCGGCAGCCAGAATCTGAAGTTGGGATTCAGCCACTACATAAGAAATTAAAGTCTGCTACTAGAGTACCGCAAAAGAAGAAAAATGAGACATCTCCTTCATCTGAGGAAGCTTCCGAGTCAGAGGAAGAGGTCATACTTCCTGTAAGCAAAAAACCTAATTTGGCAAAGAAAATTCCAGCAAAAGGTAGTAGCAGCGAGGAGGATTTGTCAGATGAGGAACCTGGAATAGAACTGGTTGCCGCGGCTAAGAAGAGCCCGAAGTTGGCAAACAATGGTTCAATTTCAGCTATAAGGAATGGTAAAGCAGAACCAACTGATGATTCAGAGAGTGATTCTGAAGAAGAAAAGGTAAAGAAGCCTTTGCAAACAAAGGGTGCAGAGAAAATTGGTTTTTTCAAAGGGAAACTGATGGAAGAAAGCAGTGATGATGATGATGACAGCGAGGATGAGCCTTCTGATGAGGGATCTGACAGTGAAGAATCTGAAGAGGAGATAACTGTTCAGAAGGGGATAAAGAACCAACAACCAGCAAAAATTGTGGAGGAAGAGAGCAATGAAGAGGACAGCGCAGGTGAAAGGGATGATGAACCAAAGGCCAAGCGACAGAATGTCCAGGTAAAAAAGAACCAACAACCAGCAAAAATTGCAAAGGATGAGAGCAGTGAAGAGGATAGCTCAGACGAGAGTGATGATGAACCAAAGGCCAAACAACAGAGAGTTCAGGCATCTAAGATTCGACAAACATCAAAAGCCACAGAGGATGAGAGCGAAGGCGAGGACATCTCTGATGACAGTGAGGATGACGATCTAAATGAGAGTGATGATGAACCAAAGAAGAAGCAGAGTGTCAAGGCTTCTACGCCAAAGACACCAAAGACGCCAGCAACTCCTGGATCGAAGACACTTTTTGTAGGAAACCTGTCCTTTTCTGTTGATCCAGACATCATTATTGAATTTTTCCAAGATGCTGGAGAGGTGGCTGATGTTCGGCTGGGTACAAAGGATGATGGTTCCTACAAAGGTTATGGACATGTGGAATTTGTAACCGAAGAAGCAGCTTCGAAGGCATTGGAGAAAAATGGGCAGGATTTGCTTGGTCGTCCTGTCAGACTTGATTTTGCCACGGAGCGTGGTGCTCCTGGATCGAAACCGGATTTCAAGTCCAGGGATAACCAGGAACAGAAATCTGGCTGTACTGTATTTGTTAGGGGATTTGACAAGAATCAAGAGGAGGATGATATTCGAAATAGCTTGTCAGAGCATTTCGATGATTGCGGAATCATTGACAACATTCGAATTCCCAAGGACTACGAGTCAGGAACCTTCAAGGGGTTCGCTTATGTTGAATTCAAGGATAGTGCTTCACTATCAAAGGCACTGGCGTTGGGTTCTGACGAGTTGTCTGTCGAAGAAGCAAGGAGTGGGGGACGTGATGGAGGTGGCAGAGGCGGTGGCCGAAGAGGAGGCAGAGGCGGTGGCAGAGGTTTTAGGGATGGAGGTGGTAGATTCTCTGGAGGACGAGGCCGCGGTGGTGGTCGTGGCACCCCTCGCGGTCGTGGTCGTGGAGATCGCAATGGGGGTCGCGGAACTCCAAAGTTCAATATGGCTCCATCTGGTAAAAAGACTACCTTTGGATTTGGAGATGATTGA___AAAAAATGAGTGCATCAGTTTGTAGTTTCATCAAATAGCAAGAATGTAGTTTCATCAAATATCAAGAACTATCGCCCATCCTTGGGACGTATGTGTATAGTATTCTGAATGCCAACTAGAATACTTACCACTGTTAGCTTTAAATTTTGTTAGTCAAAGAGCAGCATTGTCGAATCAATGCAAAAAAAATCCCATTTTTATTTGTTGAAAGCTTTTAGTTTCATCTTCTACGTCAGTTTTGGTTGTCTTTTAAGATTTTTATCAGCCATAGTTTCAATGCCGGCACAATATTCATTGCAGTTGAGAACGCGTGCTAATGAGGTAGGGTTTACATGTTACCATACAATTTGTATGTAAGTAAATCAAAGAGTATTTTAACTTCTGGTGCTCCTACATAGTCAGATTGTATCTCTTTTGTAAAAGAAGTCATATGATGCCCTCTCTGGATATATGGTTTAAAGATTTGTGATGCACATTAAATGTTTTGTAATGATTAATCATATTCTTTTGCTTCTCTTTGCTTTGGGGTGGATTCATATTATTGAAATTTATATTGTGATGTCTTTGACATACGGGGATCCGTATTCATTGCCCACCAATCTAGCGAAAGGGATGTAAAATCGAATCTCTATGGATTTGTTAATTTATGTTACTTTGAATTG

Fln Alignment:

sp_v1.1_unigene24472___LFVGNLSFSVDPDIIIEFFQDAGEVADVRLGT-KDDGSYKGYGHVEFVTEEAASKALEK-NGQDLLGRPVRLDFATERGAPGSKPDFKSRDNQEQKSGCTVFVRGFDKNQEEDDIRNSLSEHFDDCGIIDNIRIPKDYESGTFKGFAYVEF
A9NWK5_______________LFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVELFNRHSLEGRLLTVNKAAPRGTKVERP------SQAGSSTNKIYVGNLPWQADD----NSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTY

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
130	50			50	1.0
131	50	50			1.0
133	50			50	1.0
137	50	50			1.0
138			50	50	1.0
139			50	50	1.0
143	50			50	1.0
144	50		50		1.0
146		50	50		1.0
148		50	50		1.0
149	50			50	1.0
150	50	50			1.0
183			16	83	0.994512
184			16	83	0.994512
211			87	12	0.992554
216			12	87	0.992554
302	12		87		0.992554
355			28	71	1.0
356	28			71	1.0
361			28	71	1.0
415		14	85		0.993533
417			85	14	0.993533
419	85		14		0.993533
420	85	14			0.993533
421	14	14	71		0.984337
425	85		14		0.993533
426	85		14		0.993533
428	85			14	0.993533
429	85		14		0.993533
430			85	14	0.993533
431	85	14			0.993533
433	85	14			0.993533
510		80	20		0.995493
511			20	80	0.995493
2120	83		16		0.994512
2123	83		16		0.994512
2127		16		83	0.994512
2173			10	90	0.999898
2181	90	10			0.999898
2188			90	10	0.999898
2189	90	10			0.999898
2206		13		86	1.0
2207	86		13		1.0
2210	86		13		1.0
2211	86			13	1.0
2214	86	13			1.0
2219		86	13		1.0
2222		86		13	1.0
2223		86	13		1.0
2227	13	86			1.0
2228		13		86	1.0
2230		13	86		1.0
2231	8		86		0.999539
2661	11			88	0.923564
2662	11	88			0.923564
2663	12			87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
916	930	TGA TGA TGA TGA TGA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain