SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24416

Length: 1004 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24416

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-like protein n=1 Tax=Phaseolus vulgaris RepID=P93501_PHAVU	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	protein binding	GO:0005515	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	99%
Blast2go	Ubiquitin conserved site	IPR019954	-	99%
Blast2go	Ubiquitin supergroup	IPR019955	-	99%
Blast2go	Ubiquitin subgroup	IPR019956	-	99%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 325 - 458

Fln protein: LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPGQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV

Protein Length: 326

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGCTCGAGGATGGTCGAACCCTTGCCGACTATAACATCCAGAAGGAATCCACCCTGCATCTTGTCCTACGTCTGAGAGGTGGGATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACTTTGGAGGTTGAGAGCTCAGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGGCCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTTGCTGACTACAATATTCAGAAAGAATCTACCCTGCATCTTGTTCTCCGTCTGAGAGGTGGCATGCAGATCTTTGTCAAAACTCTCACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCAGACACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATaCCTCCTGACCAGCAGCGTCTAATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACCCTTGCCGACTACAATATCCAGAAAGAATCCACCTTGCACCTGGTCCTACGTCTGAGGGGTGGTATGCAGATCTTTGTTAAAACTCTAACCGGCAAGACGATCACCTTGGAAGTTGAGAGCTCTGATACTATTGATAATGTTAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAACAGAGGCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGGACCTTGGCAGATTACAACATTCAGAAGGAATCAACGTTGCACCTTGTGCTTCGTTTAAGAGGTGGTATGCAGATTTTCGTGAAAACCTTGACTGGGAAAACTATTACCTTGGAGGTAGAGAGCTCCGACACCATTGATAATGTGAAGGCGAAAATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGGCTGATTATAACATTCAGAAGGAGTCTACTCTGCATCTGGTGCT

Fln Alignment:

sp_v1.1_unigene24416___LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPGQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
C0PSZ6_______________LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
724		7	92		0.999532

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain