SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24377

Length: 1341 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24377

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GLIP6; carboxylesterase/ lipase [Arabidopsis thaliana] sp\|Q9C996.1\|GLIP6_ARATH RecName: Full=GDSL esterase/lipase 6; AltName: Full=Extracellular lipase 6; Flags: Precursor gb\|AAG51687.1\|AC016972_6 putative proline-rich APG protein; 47176-45828 [Arabidopsi	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	protein	-	-	59%

Source	InterPros	Term	Type	Identity
Blast2go	Lipase, GDSL	IPR001087	-	59%
Blast2go	Lipase, GDSL, active site	IPR008265	-	59%
Blast2go	Esterase, SGNH hydrolase-type	IPR013830	-	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR47

Fln msg:

Fln protein: MEFLAMFIACSSAALMLFLSFPFATAMHYNVPAMFIFGDSLADAGTNNFIANTTSKANFPPYGETFFHHPTGRFTNGRTAFDFIATKLRLPFPPPYLKPRSDFSRGINFASGGSGLLDSTGNYLNIIPLSLQIRQFANYSSRLGKKLGGDYYAKEYLSHSLYTIDSGGNDIGLNYLANTTFQKSTSAQDFVKLLLSKYNEHLLKLHNKGARKFIVINIPAVGCTPNSRLAGVKAYNGGCVETANQLAVAFNDGLKLLVNQLNKKLDGATILLANAYDFVLNLIQHGESYGFKNTTSACCGAGPFNTAVSCGLEIPKKERGEYRAFLCKRPEKYVFWDGTHSTQKVYWMVSRDIWNGNISFITPFNLKILLHKH*

Protein Length: 375

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCTCTATAACGTCGTGACCTTGGCTGTCACTCAATCCAATATCCACACCTTCTTTTACTTCCCTGCACTCATATTCCTTTATC_-_ATGGAGTTTTTAGCAATGTTTATTGCCTGCTCCAGCGCAGCCCTTATGTTGTTTTTATCTTTTCCTTTCGCTACTGCCATGCACTATAACGTCCCCGCCATGTTCATTTTTGGGGATTCTCTAGCAGACGCTGGTACCAACAATTTCATTGCCAACACAACCTCCAAAGCTAATTTCCCGCCTTACGGGGAGACCTTCTTCCATCACCCCACTGGTCGTTTCACTAATGGCCGAACTGCATTCGATTTTATCGCTACTAAGTTAAGGTTGCCGTTCCCACCTCCATATCTGAAGCCAAGATCTGATTTCTCTCGTGGTATCAATTTCGCATCTGGAGGAAGCGGATTACTAGATTCCACAGGGAATTACTTGAATATCATCCCTCTAAGTCTCCAGATACGCCAATTCGCCAACTATTCTTCGCGTCTAGGGAAAAAACTTGGAGGAGATTATTATGCAAAAGAATATCTATCCCATTCCTTGTATACCATTGACAGTGGTGGCAATGATATTGGCCTCAACTATTTAGCGAATACCACCTTCCAAAAGTCTACAAGTGCCCAGGATTTCGTTAAGCTGCTGCTTAGTAAATATAACGAACACTTGTTGAAGCTACACAATAAGGGGGCAAGAAAATTCATTGTAATAAACATCCCTGCTGTGGGATGTACTCCAAATTCAAGGCTCGCTGGAGTGAAAGCATATAACGGTGGATGTGTGGAAACTGCAAATCAGCTGGCAGTGGCATTTAATGATGGTCTCAAGCTGCTCGTAAATCAGCTGAATAAAAAATTAGACGGGGCAACCATCCTGCTTGCTAACGCTTATGATTTCGTATTAAATTTAATTCAACACGGCGAATCCTATGGTTTTaAAAACACGACGTCTGCGTGCTGTGGAGCGGGGCCTTTTAACACGGCTGTGTCTTGTGGGTTGGAGATTCCAAAGAAGGAGCGTGGAGAATACAGAGCTTTTCTTTGCAAACGTCCAGAGAAATACGTGTTTTGGGATGGAACCCATTCCACTcAGAAAGTGTATtGGATGGTTTCTCGCgATATTTGGaATGGcAATATATCCTTCATCACACCTTTCAATCTCAAAAtATTGCTGCACAAACATTGA___AGgGGAGATCATTCTTTTCGTTGACTTTGTAATTGGGTAATTATGGTCAAGGTTGAAACTGCTGCACAAACATTGAAGAGGAGATCATTATTTTCATTGACTTTGTAAT

Fln Alignment:

sp_v1.1_unigene24377___MEFLAMFIACSSAALMLFLSFPFATAMHYNVPAMFIFGDSLADAGTNNFIANTTSKANFPPYGETFFHHPTGRFTNGRTAFDFIATKLRLPFPPPYLKPRSDFSRGINFASGGSGLLDSTGNYLNIIPLSLQIRQFANYSSRLGKKLGGDYYAKEYLSHSLYTIDSGGNDIGLNYLANTTFQKSTSAQDFVKLLLSKYNEHLLKLHNKGARKFIVINIPAVGCTPNSRLAGVKAYNGGCVETANQLAVAFNDGXXXXXXXXXXXXDGATILLANAYDFVLNLIQHGESYGFKNTTSACCGAGPFNTAVSCGLEIPKKERGEYRAFLCKRPEKYVFWDGTHSTQKVYWMVSRDIWNGNISFITPFNLKILLHKH
B8LR47_______________MELFTMFVAYSSAALMLLLSFPLATATNHNVPAIFIFGDSLADAGNNNFIANTTAKANFTPYGETFFHRPTGRFSNGRTAFDFIASKLRLPFPPPYLKPHSDFSHGINFASGGSGLLDSTGNYLNIIPLSLQISQFANYSSRLGQKLGGDYYAKEYLSQSLYVISSVGNDIGLNYLANTTFQRTTSAQDFVKLLLSKYNEHLLSLYSIGARNLIVIGGPLVGCNPNARLAGMKEYNGGCLETANQLAVAYNDGLTQLINNLNKQLDGTTILIANVYDFLLNIIQHGESYGFKNTTSACCGAGPFNTAVSCGLEIPADKREEYTAFLCKRPEKYIFWDGTHPTEKVYRMVSRQIWHGNTSFISPFNLKTLLRKH

SNPs (tot: 102)

Position	A %	C %	G %	T %	Probability
233	80	20			0.995493
236	80			20	0.995493
240		20	80		0.995493
241		80		20	0.995493
246	80		20		0.995493
247		80		20	0.995493
250	80			20	0.995493
284		16		83	0.994512
285			16	83	0.994512
288		83	16		0.994512
289		83		16	0.994512
295	83		16		0.994512
320	8	88			1.0
335		5		94	0.998894
348	5		94		0.998894
360	78	21			1.0
367		69	30		1.0
375	93		6		0.999264
414	6		93		0.999453
470	86		13		1.0
495		85		14	1.0
524		66		28	1.0
526	85			10	0.999793
527		10		89	0.999919
528	5		10	84	0.999846
530	16			77	1.0
531			22	77	1.0
532		88		11	0.999937
534	17	82			1.0
537	12	81			0.999943
538		12	6	81	0.999943
542		13	86		0.999973
543	80	13			0.999961
561		20		80	0.999996
562	70	30			1.0
587			22	77	0.999999
603	22		77		0.999999
604	77	22			0.999999
651	7	78		14	0.999974
660		25	75		1.0
691		62		37	1.0
722	50		50		1.0
723			50	50	1.0
726	50		50		1.0
727		33		66	1.0
731	50	16	33		1.0
733	50		50		1.0
747	50	50			1.0
751	66		33		1.0
754		16	83		0.994512
761	50		50		1.0
764			16	83	0.994512
770		33		66	1.0
777	50		50		1.0
795			75	25	1.0
798		87	12		0.992554
810	50		50		1.0
819		50		50	1.0
824	11		88		0.923564
836		77	22		0.999999
869			77	22	0.999999
875	25		75		1.0
878	12			87	0.992554
879	12		87		0.992554
885	25	75			1.0
890	87		12		0.992554
910		33	66		1.0
912	33		50	16	1.0
918		50	50		1.0
927	16			83	0.994512
929		50		50	1.0
936	50			50	1.0
946			83	16	0.994512
974	16	83			0.994512
985	75		25		0.996473
1011	66		33		0.997452
1062			85	14	0.993533
1063	14		85		0.993533
1065			57	42	1.0
1070	14		85		0.993533
1071	71	28			1.0
1079	33		66		1.0
1080	83	16			0.994512
1110		50		50	1.0
1113	25		75		0.996473
1132		33		66	0.997452
1138		66	33		0.997452
1144	33		66		0.997452
1146		33	66		0.997452
1150		66	33		0.997452
1151	33		66		0.997452
1163	33		66		0.997452
1165	66	33			0.997452
1167			33	66	0.997452
1174	66	33			0.997452
1176	33			66	0.997452
1179	66		33		0.997452
1184		33		66	0.997452
1214	66		33		0.997452
1216		33		66	0.997452
1236	66	33			0.997452
1243	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain