SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24360

Length: 2699 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24360
CGTGGTGAAAGTTACGCGAGTGACATGATTGAGATCGACTTTACCGAGAGCTTAAATCTTCAAAGGTCTCTACTTTCTCATTCCTTTAGTCGCTCGCGAGGGTTTTAGTAGCTCTGGTTCGATTCGCGTATCATTGAAAAGGGTTACTGCCGAGTGCTGCTTCGGCTTCTAATAACCTGAAATAACCTTGTAGCTATCATTAATCTCAGTTTTGTAGACGGGAGCATTTTCGAATTCAGCTGTGATTCGGTGGTTTTTGTCCAGTCTAGCGTTTGTTCCCTCGACGGACTGCTAGCCGCCTTCACTTGCAGCCATGCATGCTCCTGTTCTTGTTTTGAATGACGCTATAAAGCGGGAGTCTGGAAATAGGGTGCACCATGCAAATATTCAGGCATCAAAGGCTGTTGCAGATATTATTCGAACCACATTAGGTCCCCGTTCTATGATGAAGATGCTACTCGATGCAGGAGGAGGCATCGTGGTTACAAATGATGGTAATGCTATCTTGCGGGAGTTGGATTTGGCACATCCAGCTGCAAAGTCGATGATTGAATTAAGTCGCACTCAGGATGAGGAAGTAGGTGATGGCACAACATCTGTGATTGTGCTAGCTGGTGAGATGCTGCATGTAGCTGAAGCCTTCATTGACAAGGCTTATCACCCTACTGTAATTTGCAGAGCTTACAGTAAAGCTCTTGAGGATGCTATTGCTGTTCTTGACAAGATTGCTATTCCTATTGATGTAAATGACCGCCCTACAATGTTGAAAATGGTTAAGAGCTGTATTGGCACAAAATTTACTGGTCAATTTGGAGACCTCATCGCGGATATGGCAATTGATGCAACAACTACCGTGGGTGTTGATCTTGGTAATGGGTTGCATGAAGTTGATATAAAGAAATATGTTAAAGTAGAGAAGGTTCCTGGAGGCCAGTTGGAAGATTCAAAGGTTCTCAGGGGTGTTATGATTAACAAAGATGTTGTCGCACCTAGTAAAATGAGGAGAAAAATTGTCAATCCTCGAATCATTCTTTTGGACTGTCCGCTTGAGTACAAAAAGGGAGAGAACATGACAAATGCAGAATTAATTAGAGAAGAGGACTGGGGTGTTTTATTGAAGATGGAAGAGGAGTATATTGAAAAGATTTGTGTGCAAATTTTATCTTTCAAGCCAGATTTAGTAGTCACTGAAAAGGGGCTTAGTGATCTTGCTGCTCACTACTTTAGTAAAGCAGGAGTTAGTGCAATCAGAAGACTAAGGAAAACGGATAACAATAGAATTGCTAAAGCTTCCGGAGCTACAGTTGTAAACAGACCGGAGGAACTGCAGGAAAGTGATGTTGGAACTGGGGCAGGATTGTTTGAGGTCCAAAAGATTGGGGACGAGTATTTTACTTTTATAGTTGACTGCAAGGATCCAAAAGCTTGCACAGTCCTCCTGAGAGGTGCCAGCAAAGACCTATTAAATGAGGTTGAACGGAATTTGCAGGATGCCATGTCAGTAGCCCGAAATATGATCAAGAATCCAAAGCTTGTTCCAGGTGGTGGTGCAACTGAACTCACAGTATCAGCAACTTTGAAACAAAAGAGTTCAACGGTTGAGGGCATAGAGAAGTGGCCTTATGAAGCCGTGGCTTTAGCTTTTGAGGCAATACCAAGAACTTTGGCCCAAAATTGTGGTGTGAATGTCATTAGAACGATGACAGCATTGCAAGCAAAGCATGCCAATGGGGAAAATGTGTGGACTGGGATAGATGGCAACACAGGAGCAATCACTGACATGAAAGAACGCGGGATATGGGATGCGTATAATGTGAAAGCCCAAACCTTCAAAACAGCCATTGAGGCAGCCTGTATGCTTCTTAGAATTGATGACGTTGTAAGTGGAATAAAGAAGAAGCAAGCTCCAGGCAGTTCAGGACCAACAAAACCTCAAGTAGAGGATGAAAAGGACGTTGACAGTGAGCAGATGATTCCAGAATAATGAGATACCTGTTTACAATTAAATCGCGCTTGTCAATTCCAGCAATGTTTATTATGCTTTGGATGATAATGCTTCTGTCAAGATTTGCCACAGTTATTAATGAATTCAAGTGCAAGTACAAGGTATTCGTTTTGGAGTGATAAATGTCAATGAGGAGAAAGTCGGGGGTGAGGGGGGCGTGTGTGATTTTGTGAGTACATTATAAATTTTTACGGGGTTCTCTCTCTAATTTTAACTTGCAGATGGACGGTAGGCATGCATTTATTTCAGACTCTAACCTGTTAGAGTCGAAAGAATAATTTCAATATATCTGGCCTACTGCTGCTGTCATTTCATAGAACATGAATTATTTTTGCACAGCGTCAACGTTTTTGCCCATGGAAAAAGCAGAATGCACTTTAATCAATGTATTTCTAGTTTTTTGAATGAGTTTATAGAATCCGATGTCAAGAATTTGACAAACAGTATGGGTTATAAATTGATGTTCAGATTGTCATCACATAATTCCATTCCACTTGGATCAGCTGTGGCAAGCATACGCCCGTTTTATAACTGATGTTTTTGAATGAACATTTTACTCTTGCAGCATCATATTTACTGCCAAAGTGATTCCATTGTTGGTCAATGTAAATACGAGTGTATTGCTATTGCTTTAGTACAGTACTGGGTCCAATCAAAGCTTCTATCGAAAATCGTTAGTATCATGGATGGTTGC

Ace file of the UniGene sp_v1.1_unigene24360

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chaperonin, putative	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	chaperonin containing t-complex protein gamma	-	-	92%

Source	InterPros	Term	Type	Identity
Blast2go	Chaperonin TCP-1, conserved site	IPR002194	-	92%
Blast2go	Chaperonin Cpn60/TCP-1	IPR002423	-	92%
Blast2go	T-complex protein 1, gamma subunit	IPR012719	-	92%
Blast2go	Chaperone, tailless complex polypeptide 1	IPR017998	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A831

Fln msg:

Fln protein: MHAPVLVLNDAIKRESGNRVHHANIQASKAVADIIRTTLGPRSMMKMLLDAGGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKAYHPTVICRAYSKALEDAIAVLDKIAIPIDVNDRPTMLKMVKSCIGTKFTGQFGDLIADMAIDATTTVGVDLGNGLHEVDIKKYVKVEKVPGGQLEDSKVLRGVMINKDVVAPSKMRRKIVNPRIILLDCPLEYKKGENMTNAELIREEDWGVLLKMEEEYIEKICVQILSFKPDLVVTEKGLSDLAAHYFSKAGVSAIRRLRKTDNNRIAKASGATVVNRPEELQESDVGTGAGLFEVQKIGDEYFTFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSTVEGIEKWPYEAVALAFEAIPRTLAQNCGVNVIRTMTALQAKHANGENVWTGIDGNTGAITDMKERGIWDAYNVKAQTFKTAIEAACMLLRIDDVVSGIKKKQAPGSSGPTKPQVEDEKDVDSEQMIPE*

Protein Length: 558

Fln nts: CGTGGTGAAAGTTACGCGAGTGACATGATTGAGATCGACTTTACCGAGAGCTTAAATCTTCAAAGGTCTCTACTTTCTCATTCCTTTAGTCGCTCGCGAGGGTTTTAGTAGCTCTGGTTCGATTCGCGTATCATTGAAAAGGGTTACTGCCGAGTGCTGCTTCGGCTTCTAATAACCTGAAATAACCTTGTAGCTATCATTAATCTCAGTTTTGTAGACGGGAGCATTTTCGAATTCAGCTGTGATTCGGTGGTTTTTGTCCAGTCTAGCGTTTGTTCCCTCGACGGACTGCTAGCCGCCTTCACTTGCAGCC_-_ATGCATGCTCCTGTTCTTGTTTTGAATGACGCTATAAAGCGGGAGTCTGGAAATAGGGTGCACCATGCAAATATTCAGGCATCAAAGGCTGTTGCAGATATTATTCGAACCACATTAGGTCCCCGTTCTATGATGAAGATGCTACTCGATGCAGGAGGAGGCATCGTGGTTACAAATGATGGTAATGCTATCTTGCGGGAGTTGGATTTGGCACATCCAGCTGCAAAGTCGATGATTGAATTAAGTCGCACTCAGGATGAGGAAGTAGGTGATGGCACAACATCTGTGATTGTGCTAGCTGGTGAGATGCTGCATGTAGCTGAAGCCTTCATTGACAAGGCTTATCACCCTACTGTAATTTGCAGAGCTTACAGTAAAGCTCTTGAGGATGCTATTGCTGTTCTTGACAAGATTGCTATTCCTATTGATGTAAATGACCGCCCTACAATGTTGAAAATGGTTAAGAGCTGTATTGGCACAAAATTTACTGGTCAATTTGGAGACCTCATCGCGGATATGGCAATTGATGCAACAACTACCGTGGGTGTTGATCTTGGTAATGGGTTGCATGAAGTTGATATAAAGAAATATGTTAAAGTAGAGAAGGTTCCTGGAGGCCAGTTGGAAGATTCAAAGGTTCTCAGGGGTGTTATGATTAACAAAGATGTTGTCGCACCTAGTAAAATGAGGAGAAAAATTGTCAATCCTCGAATCATTCTTTTGGACTGTCCGCTTGAGTACAAAAAGGGAGAGAACATGACAAATGCAGAATTAATTAGAGAAGAGGACTGGGGTGTTTTATTGAAGATGGAAGAGGAGTATATTGAAAAGATTTGTGTGCAAATTTTATCTTTCAAGCCAGATTTAGTAGTCACTGAAAAGGGGCTTAGTGATCTTGCTGCTCACTACTTTAGTAAAGCAGGAGTTAGTGCAATCAGAAGACTAAGGAAAACGGATAACAATAGAATTGCTAAAGCTTCCGGAGCTACAGTTGTAAACAGACCGGAGGAACTGCAGGAAAGTGATGTTGGAACTGGGGCAGGATTGTTTGAGGTCCAAAAGATTGGGGACGAGTATTTTACTTTTATAGTTGACTGCAAGGATCCAAAAGCTTGCACAGTCCTCCTGAGAGGTGCCAGCAAAGACCTATTAAATGAGGTTGAACGGAATTTGCAGGATGCCATGTCAGTAGCCCGAAATATGATCAAGAATCCAAAGCTTGTTCCAGGTGGTGGTGCAACTGAACTCACAGTATCAGCAACTTTGAAACAAAAGAGTTCAACGGTTGAGGGCATAGAGAAGTGGCCTTATGAAGCCGTGGCTTTAGCTTTTGAGGCAATACCAAGAACTTTGGCCCAAAATTGTGGTGTGAATGTCATTAGAACGATGACAGCATTGCAAGCAAAGCATGCCAATGGGGAAAATGTGTGGACTGGGATAGATGGCAACACAGGAGCAATCACTGACATGAAAGAACGCGGGATATGGGATGCGTATAATGTGAAAGCCCAAACCTTCAAAACAGCCATTGAGGCAGCCTGTATGCTTCTTAGAATTGATGACGTTGTAAGTGGAATAAAGAAGAAGCAAGCTCCAGGCAGTTCAGGACCAACAAAACCTCAAGTAGAGGATGAAAAGGACGTTGACAGTGAGCAGATGATTCCAGAATAA___TGAGATACCTGTTTACAATTAAATCGCGCTTGTCAATTCCAGCAATGTTTATTATGCTTTGGATGATAATGCTTCTGTCAAGATTTGCCACAGTTATTAATGAATTCAAGTGCAAGTACAAGGTATTCGTTTTGGAGTGATAAATGTCAATGAGGAGAAAGTCGGGGGTGAGGGGGGCGTGTGTGATTTTGTGAGTACATTATAAATTTTTACGGGGTTCTCTCTCTAATTTTAACTTGCAGATGGACGGTAGGCATGCATTTATTTCAGACTCTAACCTGTTAGAGTCGAAAGAATAATTTCAATATATCTGGCCTACTGCTGCTGTCATTTCATAGAACATGAATTATTTTTGCACAGCGTCAACGTTTTTGCCCATGGAAAAAGCAGAATGCACTTTAATCAATGTATTTCTAGTTTTTTGAATGAGTTTATAGAATCCGATGTCAAGAATTTGACAAACAGTATGGGTTATAAATTGATGTTCAGATTGTCATCACATAATTCCATTCCACTTGGATCAGCTGTGGCAAGCATACGCCCGTTTTATAACTGATGTTTTTGAATGAACATTTTACTCTTGCAGCATCATATTTACTGCCAAAGTGATTCCATTGTTGGTCAATGTAAATACGAGTGTATTGCTATTGCTTTAGTACAGTACTGGGTCCAATCAAAGCTTCTATCGAAAATCGTTAGTATCATGGATGGTTGC

Fln Alignment:

sp_v1.1_unigene24360___MHAPVLVLNDAIKRESGNRVHHANIQASKAVADIIRTTLGPRSMMKMLLDAGGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKAYHPTVICRAYSKALEDAIAVLDKIAIPIDVNDRPTMLKMVKSCIGTKFTGQFGDLIADMAIDATTTVGVDLGNGLHEVDIKKYVKVEKVPGGQLEDSKVLRGVMINKDVVAPSKMRRKIVNPRIILLDCPLEYKKGENMTNAELIREEDWGVLLKMEEEYIEKICVQILSFKPDLVVTEKGLSDLAAHYFSKAGVSAIRRLRKTDNNRIAKASGATVVNRPEELQESDVGTGAGLFEVQKIGDEYFTFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSTVEGIEKWPYEAVALAFEAIPRTLAQNCGVNVIRTMTALQAKHANGENVWTGIDGNTGAITDMKERGIWDAYNVKAQTFKTAIEAACMLLRIDDVVSGIKKKQAPGSSGPTKPQVEDEKDVDSEQMIPE
D5A831_______________MHAPVLVLNDAVKRETGNRVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKAFHPTVICRAYSKALEDAIAVLNKISIPIDVNDRPTMLKMVKSCIGTKFTGQFGDLIADMAIDATTTVGVDLGNGLREVDIKKYVKVEKVPGGQLEDSKVLRGVMFNKDVVAPGKMRRKIVNPRIILLDCPLEYKKGENMTNAELIREEDWGVLLKMEEEYIEKICMQILCFKPDLVITEKGLSDLAAHYLSKAGVSAIRRLRKTDNNRIAKACGATVVNRPEELQESDVGTGAGLFEVQKIGDEYFTYIVECKDPKACTVLLRGASKDLLNEVGRNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSSVEGIDKWPYEAVALAFEAIPRTLAQNCGVNVIRTMTALQAKHANGENVWTGIDGNTGAITDMKERGIWDAYNVKAQTFKTAIEAACMLLRIDDVVSGIKKKQAPGSSAPAKPQVEDEKDVDSEQMIPE

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
393	88		11		0.923564
431		12		87	0.992554
462		87		12	0.992554
1109			90	10	0.90298
1112		10		90	0.90298
1113	10			90	0.90298
1114			10	90	0.90298
1368	12		87		0.992554
1383	14		85		0.993533
1440		16		83	0.994512
1527		80		20	0.995493
2152		10	90		0.90298
2153			90	10	0.90298
2156		11	88		0.923564
2159		12	87		0.992554
2160			87	12	0.992554
2161		12	87		0.992554
2162	12		87		0.992554
2185	84	3	11		1.0
2187		12		88	1.0
2188	84		16		1.0
2190	84	4			1.0
2191	84		12	4	1.0
2193		12		84	1.0
2194		16		84	1.0
2197			12	88	1.0
2198	84		12		1.0
2200	4		80		1.0
2201			88	12	1.0
2203			88	12	1.0
2204		10		89	1.0
2205	10			89	1.0
2265		85		14	1.0
2291	83		16		1.0
2330			26	73	1.0
2530			87	12	0.992554
2532		20		80	0.995493
2533			20	80	0.995493
2534		20		80	0.995493
2573		10	90		0.90298
2588		71	28		1.0
2612	85			14	0.993533
2613	14			85	0.993533
2633		14		85	0.993533
2635	14			85	0.993533
2636	14			85	0.993533
2637	16		83		0.994512
2638	16	83			0.994512
2639	16			83	0.994512
2645	33	33			0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain