SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24335

Length: 709 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene24335 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ	-	-	2.99878e-43	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	calcium binding protein with ef-hand motif	-	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	81%
Blast2go	EF-hand-like domain	IPR011992	-	81%
Blast2go	EF-HAND 2	IPR018249	-	81%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
175		44		55	1.0
176		33		66	1.0
180		44	55		1.0
218	44		55		1.0
252	50		50		1.0
262	44		44		1.0
279		66		33	1.0
309		55		44	1.0
317	11		88		0.923564
335	27		72		1.0
341	72		27		1.0
365	20	80			1.0
401	21	78			1.0
418		23		76	1.0
440		80		20	1.0
452	20			80	1.0
467	18	81			0.999994
509		85	14		0.999981
561	85		14		0.999981
583		10		90	0.90298
586		10	90		0.90298
595			10	90	0.90298
598	10		90		0.90298
671	80		20		0.999996
699	20	20			0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain