SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24321

Length: 1496 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24321

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein n=3 Tax=Spermatophyta RepID=A9NNS9_PICSI	-	-	85%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	60s ribosomal protein l10a-1	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L1	IPR002143	-	94%
Blast2go	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	94%
Blast2go	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	94%
Blast2go	Ribosomal protein L1, conserved site	IPR023673	-	94%
Blast2go	Ribosomal protein L1, superfamily	IPR023674	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNV9

Fln msg:

Fln protein: MSKLQSDVLREGITQVMGESKDKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKISLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNCGMEEKQVFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPARVF*

Protein Length: 218

Fln nts: ATGGGGACATAGACCAAACTACAGGATCTGACTCGGACTCCAATCAATGGTATTAACATGTGAACATGAGTGGGTTTTGTGCAAAACCCTAGCCTGGCCTTCATAGTATCATATTTGTTACCTTTGCAGTGTCAATTGGACGAGGGCAGCACGAGAACGACCAAGAGGCACAGGTAGAGGAAGCAAGGCGCCCCTTACCTGTAAACA_-_ATGAGTAAGCTTCAGAGCGACGTGTTGAGGGAGGGAATAACTCAGGTAATGGGAGAAAGCAAGGACAAAAAACGAAAATTTACAGAGACGATAGAGTTACAGATCGGGCTGAAGAACTATGACCCCCAAAAGGACAAGCGTTTCAGTGGGTCCGTAAAATTGCCCCACATTCCCCGCCCCAAGATGAAGGTCTGCATGCTCGGAGATGCCCAACACGTTGAAGAGGCTGAGAAGATCAGTCTGGACTACATGGATGTTGAGGGTCTGAAGAAAATGAACAAGAATAAGAAACTTGTTAAGAAGCTTGCTAAGAAGTACCATGCATTTCTTGCTTCAGAAGCAATTATTAAACAAATTCCAAGACTCCTTGGACCTGGTCTGAACAAGGCAGGTAAATTTCCCACTCTTGTTTCACACCAAGAGTCCTTGGAGGCCAAGGTGAATGAGACAAAGGCAATGGTTAAGTTTCAATTGAAAAAAGTTCTATGTATGGGGGTTGCTGTGGGGAACTGTGGAATGGAGGAGAAGCAGGTGTTTCAGAATGTTCAATTGAGTGTGAACTTCCTGGTATCCTTGCTGAAGAAAAACTGGCAAAATGTTCGATGCTTGTATCTGAAGAGTACCATGGGCAAGCCAGCACGTGTATTCTGA___GTAGTGCAATTTTGGTGCTAGCTTGTGTTGGTTGCATATGGAGAGGACTTTTCCTTGTTTTTTTGTTACGTTTGGTCAGGACATTACATTTTTGTTTTAGGGGTATGTTACCCAAGTGGCTTTAATCTCGGGCATTTTGGAGTAAAAGGGAAATTTAATTATTATTTTACTATTCTGTTATTGTAACTTCGGCATGCTTCTCTTTCTTTATTCAAGTAATCAGAATTGAGTAAATACTAAACCCAGTTTTTTTTGTACTTTTGAAATAGGCATATTCATTATTGTGTATGCGGGAGAGAACTGTTATTGTTTGATATATTCCTGGTTTGATTTCCGAAATGGACGTTACAGGCATACTTTGAATACTGAAAACAAACTAGAAGAGGGTACACCTGTTTCTGTTAATTATGTTTTATTCTCTGACATTTGCAAGCTGGCCTTTGACATGATACATTTTCTTTCTTTTTATTAACGCTGGCTATTTGTTTAAAATCACGAATGCAGACAATTCCAACATTGTTATTGTTAAAGGGCTTGTAAAAAAAATATTGTAGAATTAACATATAGGAGTACTGCATGTTTTGTGGCTGACCTAGCCTGCATTTTGCATTCCAAATACATGGATCAATATTTTAACT

Fln Alignment:

sp_v1.1_unigene24321___MSKLQSDVLREGITQVMGESKDKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKISLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNCGMEEKQVFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPARVF
A9NNV9_______________MSKLQSDVLREGITQVMGESKDKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHIEEAEKISLDYMDVEGLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQVFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPARVF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
259			75	25	0.997389
996			9	90	0.999842
1098	90		10		0.90298
1108			50	50	1.0
1139		14		85	0.993533
1140	85		14		0.993533
1142		14		85	0.993533
1146	14		14	71	0.984337
1147	83	16			0.994512
1148		16		83	0.994512
1149			83	16	0.994512
1150		83		16	0.994512
1153		16	83		0.994512
1154	83			16	0.994512
1156	83			16	0.994512
1157		16	83		0.994512
1159	83	16			0.994512
1161	16			83	0.994512
1218			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain