SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24303

Length: 984 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene24303 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=3 Tax=Pinus RepID=Q4PNY9_PINTB	-	-	81%
FL-Next	tr=Tau class glutathione S-transferase; Pinus densata.	-	-	81%
Blast2go	tau class glutathione s-transferase	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	78%
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	78%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	78%
Blast2go	Thioredoxin fold	IPR012335	-	78%
Blast2go	Thioredoxin-like fold	IPR012336	-	78%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4PNZ0

Fln msg:

Fln protein: MATEGEEEQVKLLGVTLSPFVVRVRIALALKGIDYEFIQETMQPKSELLLKSNPVHKKIPVLIHNGKPVCESTVIVQYIEEAWGSKAPNLMPKDPYDRAVARFWAAFVDDKIFPSMRGLFLGQGEQLQKAVEESVTNLLLIEEALRTNQCFAGKAYFGGDQIGLVDIALGGLSAFIKGLEKATDSVLIDPEKMPLLSAWMDRFCKSDGVREVMPDFAKQAEFMSTRRASMISPPTAK*

Protein Length: 239

Fln nts: ATGGGATATCAGAGAAAGAAGAGGCAGACACATAAAATTCGAAATACATTTCGAGTGCA_-_ATGGCGACAGAGGGAGAAGAGGAGCAAGTAAAGCTGTTAGGTGTGACTCTGAGTCCCTTCGTGGTGAGGGTTCGCATAGCACTTGCTCTTAAAGGTATCGATTACGAGTTCATCCAAGAGACTATGCAGCCTAAGAGCGAGCTGCTGCTGAAATCAAACCCCGTTCACAAGAAAATTCCAGTGCTTATCCACAATGGAAAACCTGTTTGTGAATCCACGGTTATTGTGCAATATATTGAGGAGGCATGGGGAAGTAAGGCACCCAATCTTATGCCGAAAGATCCATATGACCGAGCCGTTGCTCGCTTCTGGGCTGCCTTTGTAGACGATAAGATCTTTCCATCCATGCGAGGATTGTTTTTGGGCCAAGGCGAGCAGCTACAGAAAGCAGTGGAAGAGAGCGTTACCAACCTTCTTTTGATAGAGGAAGCTCTGCGAACCAACCAGTGCTTCGCAGGAAAAGCGTACTTTGGAGGAGATCAGATTGGCTTGGTTGACATCGCATTGGGTGGTTTGTCGGCCTTTATCAAAGGCCTCGAGAAGGCTACCGATAGCGTTTTAATAGATCCAGAGAAAATGCCATTGTTGAGCGCGTGGATGGATCGATTCTGTAAATCCGATGGAGTGAGAGAAGTGATGCCTGATTTTGCCAAGCAGGCGGAATTTATGTCCACTAGGAGAGCCAGTATGATATCACCGCCTACAGCTAAATAG___GGCAAACCATGCCGGCCTTATAAATTTAGCACAGACAGAGGTTATATTTGTTAAAATAAGTTAAATTTAGGTAGGCGATTCAAGTTAAATTTAGGGATTGTAGTGTGTACTTGCATATCAAGTTATTTCAATATTTAAATATTTTTATGTGTGGGTTGTAATCATCAAATTTTGTGTGATTAATAGAAAAGACGTAACTCCAATGTTTTGT

Fln Alignment:

sp_v1.1_unigene24303___MATEGEEEQVKLLGVTLSPFVVRVRIALALKGIDYEFIQETMQPKSELLLKSNPVHKKIPVLIHNGKPVCESTVIVQYIEEAWGSKAPNLMPKDPYDRAVARFWAAFVDDKIFPSMRGLFLGQGEQLQKAVEESVTNLLLIEEALRTNQCFAGKAYFGGDQIGLVDIALGGLSAFIKGLEKATDSVLIDPEKMPLLSAWMDRFCKSDGVREVMPDFAKQAEFMSTRRASMISPPTA
Q4PNZ0_______________MAREGERGQVKLLGATLSPFVVRVRIALALKGIDYEFIQEDLKTKSELLLQSNPVYKQIPVLVHNGKPVCESMIIVQYIEEAWDNKAPNLMPKDPYDRAIARFWAAFIDDKLFPYLRAALFGQGEQLQKAVEDSVTNFLLIEEALRTNRCFAGKAYFGGDEIGLIDIALGGMSTFIKAVEKATDSVLIDPEKMPLLTAWMDRFCKSDGVKEVMPDPVKHAEYLCARRASMVSPPTA

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
131	25		75		0.996473
174		75		25	0.996473
332		72		27	1.0
338		20		80	0.999999
341		80		20	0.999999
367	88	11			0.992527
391		11	77	11	0.978767
393	12	87			0.993502
394		87	12		0.993502
396			12	87	0.993502
397	12			87	0.993502
398		12	87		0.993502
400			12	87	0.993502
401	87	12			0.993502
404		12	87		0.993502
407		87		12	0.993502
411	90		10		0.991528
417		88	11		0.992527
418		88		11	0.992527
419		88	11		0.992527
421	88	11			0.992527
422	11			88	0.992527
425		11	88		0.992527
427	11			88	0.992527
429	11			88	0.992527
430		88	11		0.992527
431	88			11	0.992527
432	77		11		0.978767
433	11	88			0.992527
434		88	11		0.992527
436	77	11			0.978767
440	87		12		0.993502
442			12	87	0.993502
443		87	12		0.993502
445		16	83		0.994512
447		16		83	0.994512
448		83	16		0.994512
449	16	16		66	0.988813
451		83	16		0.994512
458	20		80		0.995493
514	20		80		0.995493
568	80		20		0.995493
571	20	80			0.995493
605	40		60		1.0
674		33		66	0.997452
701		66		33	0.997452
798		66		33	0.997452
832		66	33		0.997452
868	33		66		0.997452
885	33	66			0.997452
894	33		66		0.997452
909		66		33	0.997452
920	33		66		0.997452
952			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain