SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24282

Length: 1349 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24282

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative class I chitinase (Fragment) n=1 Tax=Picea abies RepID=Q6SSF2_PICAB	-	-	90%
FL-Next	sp=Translationally-controlled tumor protein homolog; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	66%
Blast2go	translationally-controlled tumor	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	70%
Blast2go	Mss4-like	IPR011057	-	70%
Blast2go	Mss4/translationally controlled tumour-associated TCTP	IPR011323	-	70%
Blast2go	Translationally controlled tumour protein, conserved site	IPR018103	-	70%
Blast2go	Translationally controlled tumour protein	IPR018105	-	70%
Blast2go	Lysozyme-like domain	IPR023346	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZRX0

Fln msg: your sequence is longer than subject: 271 - 167

Fln protein: MAMGRICLVVLLALALCLNVSLASKKMKICDKGWECKGVYCCNQTISEIFTVDNFEQLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQQKELAAFLGNVAAETSCGYNVATGANPLPRVGRMKVLTIKLQSVDIVDTFRLQEQPSFDKKQFLAFIKRYIMFLNTRLFLKPEGIQKKQFLAFIKRYIKNLNTKLSEERQAEFKKNVEAAAKWLVSKLSDLQFFVGESMHDDGSMVFAYYKEGAADPTFLYFADGLKEVKC*

Protein Length: 272

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAGGTCGAGTTACGCGATCTGTCGGTCGCCAAAGGAACCCACGCTCTGGGTATGGTGACGAGATCGAATCTCATTCGATAAAAGGCAAGCCAGAAGAAGAAGAGGTCCCTGAATATTGGCATTAAGGTTCAAAATCTTCCTAGATCTGGTGGGTTTCTGGCCAGAATCTCAGTGTCTGTGCCTGTTTTTCTACTGCATTGTGTTTCTCTGATAGATCTGTTAGAATTGGCTTTTGAATTGGTTTTGCAGGCGGAGATCTCGCCTGTC_-_ATGGCGATGGGAAGGATTTGTTTGGTTGTTTTGTTGGCATTGGCACTGTGTTTGAATGTTTCACTGGCGTCGAAGAAGATGAAGATCTGCGACAAGGGATGGGAATGCAAGGGGGTTTATTGCTGCAACCAGACTATATCGGAAATTTTCACAGTGGACAATTTCGAACAACTCTTCTCCAAGAGGAATACCCCGGTGGCTCATGCGGTCGGTTTCTGGGATTACTATTCCTTCATCAACGCGGCTGCACAGTTCGAGGGCATAGGATTTGGTACTACTGGAGGACAGGTGATGCAGCAGAAGGAGCTTGCAGCCTTCCTTGGCAATGTTGCAGCTGAAACTTCATGTGGTTACAATGTTGCTACTGGTGCCAACCCTTTGCCGAGGGTGGGGAGGATGAAGGTGTTGACGATCAAGCTCCAAAGTGTTGACATTGTTGATACCTTCAGGCTCCAGGAACAACCTTCTTTTGACAAAAAGCAATTTCTGGCATTTATTAAGCGATACATTATGTTTCTTAATACCAGATTGTTCCTGAAGCCTGAAGGTATTCAAAAAAAGCAATTTCTGGCATTTATTAAGCGATACATTAAGAATCTTAATACCAAATTGTCAGAAGAACGACAGGCCGAATTTAAGAAAAACGTGGAAGCAGCTGCCAAATGGCTGGTTTCTAAGTTGAGCGACCTCCAATTTTTTGTCGGAGAGAGCATGCATGATGATGGCTCTATGGTTTTTGCATACTACAAGGAAGGGGCTGCTGATCCGACATTTTTGTACTTCGCTGATGGCTTGAAGGAGGTCAAGTGTTAA___ACACAGCTTCTGCCCGTCTTGACTTAGTCATCGATATGATATTATTAACTCTATTGAGGACATCAATTATTTATTTTATGAATTAGTGTGTATTGCAATTTGGAACCACTACTATTTTCCAGACTACTTTTTGGAATCAATGGGACCTGTTTAGTTAACTAGACAGGCATATATTTCGGTGGAATCATAGTATTATTTGAATATGTTAATTGCAGTTGAGATTTCGAAAAAATTGTTTTGTGTT

Fln Alignment:

sp_v1.1_unigene24282___NVATGANPLPRVGRMKVLTIKL-QSVDIVDTFRLQEQPSFDKKQFLAFIKRYIMFLNTRLFLKPEGIQKKQFLAFIKRYIKNLNTKLSEERQAEFKKNVEAAAKWLVSKLSDLQFFVGESMHDDGSMVFAYYKEGAADPTFLYFADGLKEVKC
Q9ZRX0_______________DVDIGANPSAEGGDEEGVKIRLVKVVDIVDTFRLQEQPPFDKKQFLG---------------------------FIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1341	60	20		20	1.0
1342	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
117	128	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain