SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24279

Length: 1468 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24279

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DAG protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SE52_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dag chloroplast	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S8, subtilisin-related	IPR015500	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P070

Fln msg:

Fln protein: MMNAGRTLRFISSKLSPASSKAAPFTTRAGSPQTAFHGRETSLIEFRGRRFLGAVSIPQAPVRVPLKYFSAIPTNSSMTDPSPNWSNRPPKETILLDGCDYEHWLIVMEPPEGNPTRDEIINSYIKTLAQVVGSEEEARMKIYSVSTKHYFAFGCLVSEELSYKIKPLPNVRWVLPDSYLDPRTKDYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNFERRREMQQQARQNYQRPPPPPPRAADSTLPPPPPPGAADSNMQPPRNMPPPRNTQY*

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCACAGCCCGTACCTACTGTCATTTTATAAACCCTTACCCTAGAAACGTAGGGTTTTGTTTTGATTTCTCAGGTTCTGTGATTGTCTCTGCCATATTCTTTATTCATCTTATTCTTTTGCTTCTCAGACAGTTTACCGGAAAAG_-_ATGATGAATGCGGGTAGGACTCTTCGTTTCATTTCGAGCAAGCTCAGTCCTGCAAGCAGCAAAGCGGCGCCCTTTACAACAAGGGCTGGGTCACCTCAGACTGCCTTCCATGGCAGAGAAACATCCCTCATCGAGTTCCGCGGCAGGCGATTTCTTGGAGCGGTTTCTATCCCGCAAGCTCCTGTTCGAGTTCCTCTGAAATATTTTTCTGCTATACCCACTAATTCCTCGATGACGGATCCTTCTCCCAACTGGAGCAACCGGCCCCCAAAGGAGACGATTCTGCTAGATGGCTGCGATTACGAGCATTGGCTCATTGTCATGGAGCCCCCTGAGGGCAACCCCACCAGGGATGAAATTATTAATAGCTATATAAAGACTCTCGCTCAGGTTGTAGGAAGCGAGGAGGAAGCCAGGATGAAGATTTATTCTGTATCTACAAAACACTACTTTGCATTTGGCTGCCTCGTATCGGAAGAGCTGTCTTACAAGATTAAGCCCCTGCCTAATGTACGCTGGGTGCTCCCTGATTCTTACTTGGACCCCCGAACTAAGGACTATGGAGGGGAACCTTTCATTAATGGACAAGCGGTTCCATATGATCCGAAGTACCATGAAGATTGGGTAAGGAACAATGCACGATGCAACGAAAGACGGTCCAATGATAGACCACGGAACTTTGACCGATCAAGGAACTTCGAGAGGCGAAGAGAAATGCAGCAGCAAGCAAGGCAGAATTACCAGCGCCCTCCACCACCCCCCCCTCGAGCAGCAGATAGTACTTTGCCGCCTCCACCACCCCCTGGAGCAGCAGATAGCAATATGCAGCCTCCAAGAAATATGCCGCCTCCAAGAAATACCCAGTATTAA___GTTGCTGAAAGTAGGCCACTAAGGCCAGGGTGTACCCCTGTGGCATATTTACAACACATTGACTACACTTATTCATTAACACGTTAGCAGGGGATGCTATGTACTGCAGTACTTGCCTTGCAGTAATAGAACATTATTAGAGTTGAATGTTTATGTACGGCACATAGCAAAAATAGCAGAAATAGAATAGGTTTCTAGGCAAGGTGTTCTTGTGTCTAAGGTTGGTTAATCTATAATGTGGTTTTCTATCCCTGATGCAGGACATGCTAAACTATTCCATGTGTAATATTCTGGACATTGTTTTGGCTAACGAATATTTATGTGAATGTTTAAACAGTAAAGTACTCCCTTTATATATCTGGGCTAAATCGAAAGTTTGCACGCTTTTTGTGACCCACGGTTTGGTTAATATATTTTTCTTATTCGAC

Fln Alignment:

sp_v1.1_unigene24279___FTTRAGSPQTAFHGRETSLIEFRGRRFLGAVSIPQAPVRVPLKYFSAIPTNSSMTDPSPNWSNRPPKETILLDGCDYEHWLIVMEPPEGNPTRDEIINSYIKTLAQVVGSEEEARMKIYSVSTKHYFAFGCLVSEELSYKIKPLPNVRWVLPDSYLDPRTKDYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNF
A9P070_______________FTTRAGPLQTALHGRETSLIGFRSMRFLGAVSISQPPARVHLRCFSAIPTNSSMTDPSPNWSNRPPKETILLDGCDYEHWLIVMEPPEGNPTRDEIIDSYIKTLAQIVGSEEEARMKIYSVSTKHYFAFGCLVSEELSYKIKPLPNVRWVLPDSYLDPRTKDYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNF

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
25	66		33		0.997452
27		33	33	33	0.997753
28	33	66			0.997452
29		66		33	0.997452
31	33	66			0.997452
32		33		33	0.997753
33	66			33	0.997452
35		66	33		0.997452
37		66		33	0.997452
40	66	33			0.997452
41	33	66			0.997452
46	33			66	0.997452
61		75		25	0.996473
63			25	75	0.996473
65	75		25		0.996473
66	25	75			0.996473
70	75			25	0.996473
73	75		25		0.996473
74	75	25			0.996473
75		75		25	0.996473
79			75	25	0.996473
80		25	75		0.996473
81	25		75		0.996473
114			10	90	0.90298
115		90		10	0.90298
117		90	10		0.90298
119	10		90		0.90298
519	91		8		0.999766
520		91	8		0.999766
522	87			12	1.0
524			91	8	0.999766
525		8	91		0.999766
935		83		16	0.994512
936		83		16	0.994512
938			20	80	0.995493
943		80		20	0.995493
946		85		14	0.993533
950		14		85	0.993533
953			14	85	0.993533
954	85	14			0.993533
1312	90	10			1.0
1339		92		7	0.999532

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain