SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24260

Length: 834 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24260

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cl30871_1; LOC100273013; K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	dolichyl-phosphate beta-glucosyltransferase	-	-	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Dolichyl-phosphate beta-glucosyltransferase.	EC:2.4.1.117	-	0.0	61%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	N-Glycan biosynthesis	00510		0.0	61%
AutoFact	Metabolic pathways	01100		0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 2	IPR001173	-	0.0	75%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
56	22	77			0.999999
58	22			77	0.999999
61		22		77	0.999999
62	22		77		0.999999
64	22	77			0.999999
65	22	77			0.999999
66			22	77	0.999999
68		22	77		0.999999
69		22	77		0.999999
74	22	77			0.999999
79	77			22	0.999999
104		10	90		0.90298
106	90			10	0.90298
107		10		90	0.90298
108			10	90	0.90298
114	90		10		0.90298
115		90	10		0.90298
122		10		90	0.90298
123	10			90	0.90298
127	10	90			0.90298
128		10		30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain