SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24236

Length: 1252 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene24236 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tumor suppressor candidate, putative n=1 Tax=Ricinus communis RepID=B9RXQ7_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	ost3 ost6 family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Magnesium transporter protein 1	IPR006844	-	0.0	78%
Blast2go	Oligosaccharyl transferase complex, subunit OST3/OST6	IPR021149	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9F5

Fln msg:

Fln protein: MAKKAMGVLVVGMALMILMATAVKGRWEWEKNEEVEELVNLQSRSKAGVIHLDDSSLERFAVKAKSRSYSLIIFFDSVQHREKPDLRLDLLRAEFELVASSFLKNNQGQPSATKVFFCDIEFVESQASFGKFGVNTLPHIRHVGPGSTKLKDAESIEQNEIARSAEGIAAFVESKTKYRVGSIERPPPISKKQVIFVGGVLVLAAPFVVKRILTQDTPLHDPKVWLASAVFIYFFSVSGAMHNIIRKMPLFMTDRNNPNKLVFFIQGSGVQLGAEGFAVGFLYTLVGLLLAFVTHFLVYVKSQNAQRLLMLITMAVSFWAVKKVISLDNWKTGYGIHGFWPSAW*

Protein Length: 346

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAAATGTTTTATTTATGCTGGTTCGCTCGGTGCTGAGAAAGAGGGGACGAAGGGGGCAACAGGGAGCTGGAGTCG_-_ATGGCGAAGAAGGCGATGGGCGTGTTGGTGGTGGGAATGGCGTTAATGATTTTAATGGCTACCGCAGTCAAGGGAAGGTGGGAATGGGAAAAGAACGAGGAAGTGGAGGAACTGGTGAATTTACAGTCGAGGTCCAAGGCCGGAGTCATCCACCTGGACGACTCTTCGCTGGAGCGCTTCGCCGTGAAGGCCAAGTCCAGATCGTATTCCCTCATCATTTTCTTCGACTCCGTGCAGCATCGGGAGAAGCCGGACCTCCGCCTCGATCTGCTTCGTGCCGAGTTCGAACTGGTGGCCTCATCGTTCCTAAAGAACAACCAGGGCCAACCCTCGGCCACCAAGGTCTTCTTCTGTGACATCGAATTCGTAGAATCTCAGGCGAGTTTTGGGAAATTCGGAGTGAATACGCTACCTCACATCCGCCACGTTGGCCCCGGGAGCACCAAACTGAAGGACGCGGAGTCGATTGAGCAGAACGAGATTGCGAGATCGGCAGAGGGCATTGCTGCATTTGTGGAATCGAAAACCAAGTATCGCGTGGGGTCGATCGAGCGGCCACCGCCGATTTCAAAGAAGCAGGTGATCTTTGTGGGCGGGGTGTTGGTCTTGGCCGCCCCCTTCGTCGTCAAGAGGATCTTGACCCAGGACACGCCCTTGCATGACCCTAAGGTTTGGCTGGCCTCAGCAGTTTTCATCTATTTCTTCAGTGTCTCCGGCGCTATGCACAACATTATTCGGAAGATGCCGCTTTTCATGACGGACAGGAACAATCCCAACAAATTGGTCTTCTTTATCCAGGGCTCTGGCGTCCAGCTGGGCGCCGAGGGTTTTGCCGTAGGGTTTTTGTATACGCTGGTAGGGTTGCTGCTCGCCTTTGTCACGCATTTTCTGGTTTATGTGAAAAGCCAGAACGCGCAGAGGTTGCTCATGCTGATCACAATGGCTGTCTCCTTCTGGGCGGTGAAAAAGGTCATATCTTTGGATAACTGGAAGACTGGCTACGGGATCCACGGTTTCTGGCCTTCTGCCTGGTAA___TGAACGGAGCTCCTTATTGCTCGCAGGCTTTCTTCTGCTTCACAAAATCTTGTTTGCTACACACAGTGGAATCTTGTAATTCTGCCGTCGTCATTGC

Fln Alignment:

sp_v1.1_unigene24236___MAKKAMGVLVV-GMALMILMATAVKGRXXXXXXXXXXXXXXLQSRSKAGVIHLDDSSLERFAVKAKSRSYSLIIFFDSVQHREKPDLRLDLLRAEFELVASSFLKNNQGQPSATKVFFCDIEFVESQASFGKFGVNTLPHIRHVGPGSTKLKDAESIEQNEIARSAEGIAAFVESKTKYRVGSIERPPPISKKQVIFVGGVLVLAAPFVVKRILTQDTPLHDPKVWLASAVFIYFFSVSGAMHNIIRKMPLFMTDRNNPNKLVFFIQGSGVQLGAEGFAVGFLYTLVGLLLAFVTHFLVYVKSQNAQRLLMLITMAVSFWAVKKVISLDNWKTGYGIHGFWPSAW
D5A9F5_______________MGKQGMGVLVVVGMVSMLLMATAVRGRWEWEEEEEELVNM--QSRSRAGVIHLDDSSLERFAVKAKSRSYSLVIFFDAVQLRDKPELRLDLLRTEFELVASAFLKNNHGQPSATKVFFCDIEFGESQASFGNFGANTLPHIRHVGPGNTKLKDAESMEQNEMARTAEGIAAFVESKTKFRVGPIERPPPISKKQVVFVGGVLVLAAPFVIKRILTQDTPLHDPKVWLASAVFIYFFSVSGAMHNIIRKMPLFMADKNDPNSLVFFIQGSGVQLGAEGFAVGFLYTLVGLLLAFVTHFLVYVKSQNAQRLFMLITMAVSFWAVRKVISLDNWKTGYGIHGFWPSAW

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
349		80		20	0.995493
350		80	20		0.995493
352	80		20		0.995493
354			20	80	0.995493
355	20			80	0.995493
356		20	80		0.995493
357	20			80	0.995493
360		20	80		0.995493
361		20	80		0.995493
363	20			80	0.995493
364			20	80	0.995493
367		20		80	0.995493
368	20	80			0.995493
372	20			80	0.995493
374		80	20		0.995493
404			75	25	0.996473
405			25	75	0.996473
406	25			75	0.996473
412		25		75	0.996473
418	33	66			0.997452
419	33		66		0.997452
423	66			33	0.997452
430	66	33			0.997452
1028		83		16	0.994512
1029	83			16	0.994512
1079	8			91	0.999766
1164		84		5	0.999846
1206	20	20		60	0.99255
1207		50	50		1.0
1208	75	25			0.996473
1209		25	50	25	0.995533
1215	75			25	0.996473
1216		33	66		0.997452
1217		66		33	0.997452
1218		66		33	0.997452
1219	75		25		0.996473
1221		33	66		0.997452
1225	66			33	0.997452
1226		75		25	0.996473
1230			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain