SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24232

Length: 2266 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24232
CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCATATATTGTCCTCCCCCCAGAAGGATATTGGACCAGACAAGCCCTCATCATAGATTTAATTACTGATCCTTGCATCTTGGATTTGTAATCGGAGTAGTCAGGATGAATCTCTCTAGTCCAGTCAGATTCGATGAGATTTGTCACTTAGCCCATGTCGTTTACAACCCTGTTTGCTGTGGGCATAAGCCAAATCGGCTCAGGCTGATGACACCAGTCCAGGTTCGTGCTGTTAATCATGGTGGACGCAATTCTGAGATCAGTACAGATGGTAATAGCAAAGGGACAACAGCCAAGGCTGTAGCCAGTCCTGCTGGCTCTCATGTGGCTGTGGATGCCTCAAGGCTGGAGGCTAGAGTTGAGGAGAGGGATGGATACTGGGTTCTCAAAGAGGAATTCAGGGCTGGAATCAACCCTCAGGAGAAGATTAAGTTGCAGAGGGAGCCCATGAAATTGTTCATGGAGAATGAGATTGAAGAACTTGCAAAGAAGCCCTTGGCTGAAATTGAGAGTGAGAAGGTTAATAAGGATGATATAGATGTACGCCTGAAGTGGTTAGGTCTCTTTCACCGAAGAAAGCATCACTATGGGAGATTCATGATGAGACTTAAGCTTCCAAATGGAGTGACTACCAGTCTCCAAACTCGATATTTGGCAAGCGTGATTCAACAATATGGACCAGAGGGATGCGCAGATATAACGACTCGGCAGAATTGGCAGATTCGTGGAGTTGTGCTGGATGACGTGCCTGCGATATTGAAAGGGCTGAAGGAGGTTGGACTGTCTAGCTTGCAGAGTGGAATGGACAACGTTAGAAACCCTGTGGGAAATCCTTTAGCAGGGATTGATGCTGATGAAATTATTGACACAAGGCCATATACAAAGGTTCTGACTGACTACATTGTCAACAATGGAAAGGGGAATCCATCCATAACCAACCTGCCACGTAAATGGAATGTCTGTGTTGTGGGTACACATGACTTGTTTGAGCATCCCCACATCAATGACCTCGCCTACATTCCTGCAATGAAAAGTGGGAGATTTGGTTTCAATCTGCTCGTTGGTGGATTCTTTAGTCCAAAACGCTGTGAAGAAGCAGTTCCACTTGATGCTTGGGTTGCTGGAGAGGATGTTGTACCAGTATGCAGAGCCATTTTGGAGGTTTATAGAGATCTGGGCACCCGGGGAAATCGCCAGAAAACTCGAATGATGTGGCTGATTGATGAGTTGGGCATAGAGGGCTTCCGTTCAGAAGTGGTGAAGAGAATGCCAGGAGAGAAGTTGGAAAGAGCAGCAACAGAAGACATGCTAGATAAATCATGGGAGCGCAGGAGTTATCTTGGTGTGCACCCACAGAAGCAGGAAGGCTTGAATTTCGTAGGTCTCCATGTTCCAGTGGGTCGACTTCAGGCAGAAGATATGTTAGAACTGGCTCGTCTTGCAGAACAATATGGCACGCAGGAACTCCGCCTCACAGTAGAGCAAAATGCCATCATTCCAAACGTACCTACAGATAAGATAGAAGCACTTTTACAGGAACCCCTCCTCCAAAAATTCTCTCCTTCCCCTCCTCTTCTTGTCAGCACATTAGTGGCTTGTACCGGCAACCAGTTCTGTGGTCAGGCAATCATCGAAACAAAAGCAAGAGCCCTCAAAATCACAGAGGAATTGGATAGAACCATGGAAGTTCCCAAGCCTGTGAGAATGCACTGGACAGGATGCCCTAATACATGTGGACAAGTGCAGGTTGCAGACATTGGCTTCATGGGTTGCATGACTAGGGATGAAAACAAGAAAGTTGTTGAGGGAGTGGACATATTCATTGGAGGTAGGGTGGGAGCAGATTCACATCTAGGGGATTTAATCCACAAGGGAGTACCTTGCAAGGACGTGGTACCTGTGGTTCAAGAACTACTTATTAAACACTTTGGAGCCATCAGGAAAACAGACATGTGAAAATGAATTCCAATTCTCATCCATCGCCATCTTCACTGGAGAACAATCACCAGATTGCTAAGGTTCTGAGCGGGGATCCAACTCATTGCAATCTCAATAAATAAATGTAGAGATCCATTGTATAGATGTTTACGAAGTCCAACGTGTTCAGAAATAAAATAGCTGATTACTGTGTTCACAGCAGGGGTTTTTTACATTAAACTCGTCTTGCACTTTTGAACAGTATGAAATACAAATAAGAAACGGATTAGCACAAAGAATAATGGAA

Ace file of the UniGene sp_v1.1_unigene24232

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nitrite reductase (EC:1.7.7.1); K00366 ferredoxin-nitrite reductase [EC:1.7.7.1]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	nitrite reductase	-	-	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ferredoxin--nitrite reductase.	EC:1.7.7.1	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Nitrogen metabolism	00910		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%
Blast2go	apoplast	GO:0048046	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like	IPR005117	-	86%
Blast2go	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	86%
Blast2go	Nitrite/sulphite reductase 4Fe-4S domain	IPR006067	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ90

Fln msg: your sequence is longer than subject: 617 - 127

Fln protein: MNLSSPVRFDEICHLAHVVYNPVCCGHKPNRLRLMTPVQVRAVNHGGRNSEISTDGNSKGTTAKAVASPAGSHVAVDASRLEARVEERDGYWVLKEEFRAGINPQEKIKLQREPMKLFMENEIEELAKKPLAEIESEKVNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSLQTRYLASVIQQYGPEGCADITTRQNWQIRGVVLDDVPAILKGLKEVGLSSLQSGMDNVRNPVGNPLAGIDADEIIDTRPYTKVLTDYIVNNGKGNPSITNLPRKWNVCVVGTHDLFEHPHINDLAYIPAMKSGRFGFNLLVGGFFSPKRCEEAVPLDAWVAGEDVVPVCRAILEVYRDLGTRGNRQKTRMMWLIDELGIEGFRSEVVKRMPGEKLERAATEDMLDKSWERRSYLGVHPQKQEGLNFVGLHVPVGRLQAEDMLELARLAEQYGTQELRLTVEQNAIIPNVPTDKIEALLQEPLLQKFSPSPPLLVSTLVACTGNQFCGQAIIETKARALKITEELDRTMEVPKPVRMHWTGCPNTCGQVQVADIGFMGCMTRDENKKVVEGVDIFIGGRVGADSHLGDLIHKGVPCKDVVPVVQELLIKHFGAIRKTDM*

Protein Length: 618

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCATATATTGTCCTCCCCCCAGAAGGATATTGGACCAGACAAGCCCTCATCATAGATTTAATTACTGATCCTTGCATCTTGGATTTGTAATCGGAGTAGTCAGG_-_ATGAATCTCTCTAGTCCAGTCAGATTCGATGAGATTTGTCACTTAGCCCATGTCGTTTACAACCCTGTTTGCTGTGGGCATAAGCCAAATCGGCTCAGGCTGATGACACCAGTCCAGGTTCGTGCTGTTAATCATGGTGGACGCAATTCTGAGATCAGTACAGATGGTAATAGCAAAGGGACAACAGCCAAGGCTGTAGCCAGTCCTGCTGGCTCTCATGTGGCTGTGGATGCCTCAAGGCTGGAGGCTAGAGTTGAGGAGAGGGATGGATACTGGGTTCTCAAAGAGGAATTCAGGGCTGGAATCAACCCTCAGGAGAAGATTAAGTTGCAGAGGGAGCCCATGAAATTGTTCATGGAGAATGAGATTGAAGAACTTGCAAAGAAGCCCTTGGCTGAAATTGAGAGTGAGAAGGTTAATAAGGATGATATAGATGTACGCCTGAAGTGGTTAGGTCTCTTTCACCGAAGAAAGCATCACTATGGGAGATTCATGATGAGACTTAAGCTTCCAAATGGAGTGACTACCAGTCTCCAAACTCGATATTTGGCAAGCGTGATTCAACAATATGGACCAGAGGGATGCGCAGATATAACGACTCGGCAGAATTGGCAGATTCGTGGAGTTGTGCTGGATGACGTGCCTGCGATATTGAAAGGGCTGAAGGAGGTTGGACTGTCTAGCTTGCAGAGTGGAATGGACAACGTTAGAAACCCTGTGGGAAATCCTTTAGCAGGGATTGATGCTGATGAAATTATTGACACAAGGCCATATACAAAGGTTCTGACTGACTACATTGTCAACAATGGAAAGGGGAATCCATCCATAACCAACCTGCCACGTAAATGGAATGTCTGTGTTGTGGGTACACATGACTTGTTTGAGCATCCCCACATCAATGACCTCGCCTACATTCCTGCAATGAAAAGTGGGAGATTTGGTTTCAATCTGCTCGTTGGTGGATTCTTTAGTCCAAAACGCTGTGAAGAAGCAGTTCCACTTGATGCTTGGGTTGCTGGAGAGGATGTTGTACCAGTATGCAGAGCCATTTTGGAGGTTTATAGAGATCTGGGCACCCGGGGAAATCGCCAGAAAACTCGAATGATGTGGCTGATTGATGAGTTGGGCATAGAGGGCTTCCGTTCAGAAGTGGTGAAGAGAATGCCAGGAGAGAAGTTGGAAAGAGCAGCAACAGAAGACATGCTAGATAAATCATGGGAGCGCAGGAGTTATCTTGGTGTGCACCCACAGAAGCAGGAAGGCTTGAATTTCGTAGGTCTCCATGTTCCAGTGGGTCGACTTCAGGCAGAAGATATGTTAGAACTGGCTCGTCTTGCAGAACAATATGGCACGCAGGAACTCCGCCTCACAGTAGAGCAAAATGCCATCATTCCAAACGTACCTACAGATAAGATAGAAGCACTTTTACAGGAACCCCTCCTCCAAAAATTCTCTCCTTCCCCTCCTCTTCTTGTCAGCACATTAGTGGCTTGTACCGGCAACCAGTTCTGTGGTCAGGCAATCATCGAAACAAAAGCAAGAGCCCTCAAAATCACAGAGGAATTGGATAGAACCATGGAAGTTCCCAAGCCTGTGAGAATGCACTGGACAGGATGCCCTAATACATGTGGACAAGTGCAGGTTGCAGACATTGGCTTCATGGGTTGCATGACTAGGGATGAAAACAAGAAAGTTGTTGAGGGAGTGGACATATTCATTGGAGGTAGGGTGGGAGCAGATTCACATCTAGGGGATTTAATCCACAAGGGAGTACCTTGCAAGGACGTGGTACCTGTGGTTCAAGAACTACTTATTAAACACTTTGGAGCCATCAGGAAAACAGACATGTGA___AAATGAATTCCAATTCTCATCCATCGCCATCTTCACTGGAGAACAATCACCAGATTGCTAAGGTTCTGAGCGGGGATCCAACTCATTGCAATCTCAATAAATAAATGTAGAGATCCATTGTATAGATGTTTACGAAGTCCAACGTGTTCAGAAATAAAATAGCTGATTACTGTGTTCACAGCAGGGGTTTTTTACATTAAACTCGTCTTGCACTTTTGAACAGTATGAAATACAAATAAGAAACGGATTAGCACAAAGAATAATGGAA

Fln Alignment:

sp_v1.1_unigene24232___RMNLSSPVRFDEICHLAHVVYNPVCCGHKPNRLRLMTPVQVRAVNHGGRNSEISTDGNSKGTTAKAVASPAGSHVAVDASRLEARVEERDGYWVLKEEFRAGINPQEK
A9NQ90_______________QMNLSSHVRFDEICPLSRVAYDPVCSGYKPNRLRLMRAIQVRAVNHGGLNSEASGDGNNKGRTAKAVASPAGSQVAVDASRLEPRVEERDGYWVLKEEFRAGINPQEK

SNPs (tot: 125)

Position	A %	C %	G %	T %	Probability
25	20			80	0.995493
26	20	80			0.995493
27	20		80		0.995493
29	20		80		0.995493
32	20	80			0.995493
33			20	80	0.995493
34		20		80	0.995493
35	20		80		0.995493
38	20			80	0.995493
40			20	80	0.995493
41		80	20		0.995493
44		80		20	0.995493
46		80		20	0.995493
47	80	20			0.995493
89		58		41	1.0
189	46	53			1.0
212		66		33	1.0
257		45	54		1.0
304		80		20	0.999996
366	89		10		0.999919
371	10		89		0.999919
373		11		88	0.999937
374			88	11	0.999937
378	88	11			0.999952
386	87	12			0.999964
403			83	16	0.999991
490		90		10	0.90298
496	90			10	0.90298
497	90		10		0.90298
499			10	90	0.90298
502	10			90	0.90298
506			10	90	0.90298
508		10	90		0.90298
509	90	10			0.90298
678	60	40			1.0
724		71		28	1.0
735		66		33	1.0
919		33		66	0.997452
972	66	33			0.997452
974		66	33		0.997452
997		14		85	0.993533
999			85	14	0.993533
1000	85	14			0.993533
1001	85		14		0.993533
1002		12		87	0.992554
1004		12		87	0.992554
1007			87	12	0.992554
1008		12	12	75	0.975346
1009		12	87		0.992554
1010		12		87	0.992554
1013		12		87	0.992554
1014		12	75	12	0.975346
1015	12		87		0.992554
1016		12	75	12	0.975346
1017		12		87	0.992554
1018	87	12			0.992554
1019	12	87			0.992554
1020	87			12	0.992554
1156			87	12	0.992554
1164			28	71	1.0
1176		25		75	1.0
1179		25		75	1.0
1185	75			25	1.0
1187			25	75	1.0
1188	75	25			1.0
1193		8	75		0.99999
1194	83	16			0.999991
1195		8	75	16	0.99999
1197	16	83			0.999991
1224		90	10		0.90298
1473	87			12	0.992554
1474		87	12		0.992554
1475			12	87	0.992554
1501	83		16		0.994512
1553		75	25		0.996473
1556		75	25		0.996473
1558		25	75		0.996473
1559	75	25			0.996473
1561	75			25	0.996473
1562	75		25		0.996473
1564	75	25			0.996473
1566	75			25	0.996473
1567		25	75		0.996473
1569	75	25			0.996473
1570			75	25	0.996473
1698		16	83		0.994512
1816		28		71	1.0
1819	66		33		1.0
1824		33		66	1.0
1825	66			33	1.0
1826			66	33	1.0
1829	66	33			1.0
1833	66			33	1.0
1834	66	33			1.0
1837	60			40	1.0
1838	60	40			1.0
1839	40		60		1.0
1857		16	83		0.994512
1859	83			16	0.994512
1861	83		16		0.994512
1864			16	83	0.994512
1865	16			83	0.994512
1867	83	16			0.994512
1872	83	16			0.994512
1873			83	16	0.994512
1877		16	83		0.994512
1878	16		83		0.994512
1939			60	40	1.0
2047	97		2		0.914425
2048			2	97	0.917783
2050	97	2			0.917783
2074			30	70	1.0
2075		30		70	1.0
2076			30	70	1.0
2077			30	68	1.0
2078	70		30		1.0
2079			30	70	1.0
2122	50			50	1.0
2161	90			10	0.90298
2162	90	10			0.90298
2163	90		10		0.90298
2164		10		90	0.90298
2172			10	90	0.90298
2175	11			88	0.923564
2180		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain