SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24173

Length: 2112 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24173
ATGGGGGAATATCGTCTGAGAATCAATGGAATGAGAGAACGCATTCAGCATCATCCTGGTCAACAAAGTCAAAATAGGCTGGAGGGAAACATGCAGGAATATGTCGTGACCTTGGGTTTCATTGAACTTAGTGTATTTTGTTGCTTCTCTTACCACAATGCTGAACATCATTCCCTCGTTCTCTCTGAGTGAAGGCTAGGCAGAAGTATGGGTCGACCATAGCTTTGAGATTCAGATTCAGAATACATGGCACCCCCAAAGCTTAGAAGCAGACATAAGCTCAACATGAACCATTTAGTAAAAGAAGGAAAGCAGCAGCAGCAGCATTTGGAAAATAAGGGTTACTTTCCCTTCTCTTTAATGCCAATGCCAGGCAGTATGAATAGCAAATACTTAATATGTCTTTCCATGGCAGTGAATGTCTGTCTTCTCACTAGTTTGCTATATGAGAAAAACTACCATCCCATTACAATACCCAGAAACTTGTGGGGGAAAGGGAAATTATGGGTTAACAACGTGTGTATGCCTCCACAAGAAAGCGAAGCAAGCACAGTATGTGCAGTGGATGATCCAACGCATAATATTGCAGTTGCTACTGCAGGAGGTCGGGCGACATGCTCTGGCCATGGCTACTATGTTGGTAATAGTGTTTCTCCTTCTCAGCAAGCTTTAAGTGGCGGCTTCTGTAAATGCCATGCCTGCTTCACAGATCACAACTGTTCCACTCTCGTCTCCGACTGTGTCCTCCACCTTGAACAAGGAGACCCAACAATGTTTGAATCATTTTGGATCAAGAACGGGCAAAAGAGTACGACCGTGATTTTGGGTTGGCAGCTGATGAGTTACTTTGCAGATGTGGGAAACGTATGCTGGTTTTTAGAGCCAGAATTAGCAAAAGAGATCAGATCTCTTCACAGTCTTGCCGGAAATGCTGTAACAAAAGGCCGCCATATAGTGGTAGGTACAGGTTCAACGCAGCTCTTTCAAGCTGCACTGTATGCCTTATCACCCCCAGGTCGTTCCAGACCAACAAATGTTATTTCTGCGGCACCCTACTACTCGTCTTATCCATTGGAAACAGACTATTTGAAATCAGAGATCTACAAATGGGCTGGTGATGCCTGGACGTACAAGCAGACCTCAGATGAAGATTACTACATTGAGTTGGTAACTTCTCCTAATAACCCTGATGGGTTTACCAGGGAAGCAGTTGTAAATGGCTCTGGACCAGTTATATACGATTTAGCCTATTACTGGCCACATTACACCCCCATCACTGCTCCCGCAGATCAGGATCTTATGTTGTTCACGTTATCTAAAATTACAGGTCATGCAGGAAGCCGCATTGGGTGGGCTATTGTCAATGATTTGGAAGTGGCTAAAAAGATGACAGAATACATAATGCTGAATACCATTGGAGTTTCGAAGGAATCACAGTTGCGGGCCGCTCAAATATTGCACTCTGTCAGCAATAGTTATGCAGGGGAGAGAACGTTTGACAGACAAAGATACTTAAGCACAGAGCAAGAACATAGATTCTTTCATTATGGGTATACTTTAATGTCAGAGAGATGGAATAGCCTTCGACATGCAGTCAGCCTCAATCACCGCTTCACTTTGCCTGCATTTGAGCCAGCATTTTGCAACTTTTTTGGTCACCACACCACTCCTCGACCAGCTTTTGCATGGCTAAAATGTGAAGGAAAGGAGGATGAAGATTGTGAAAAGTTATTGAAAAGCAATGGAATCATCTCTCGCGGTGGGAGGCATTTTGGTGCACCCCAAACATATGTGAGGTTGAGTATCCTTGACAGAAATCAGATCTTCAATATTCTGTTGGACAGGCTGTCATCTATTCATTGATGATTACTTGAATCTCATCATAATCCCTGTTTGATTGCTCCACTGTTCATTCGTTTAAGGAGTAAATGTATGAGCAGCGTCGTTGTAATTTTTGTTGCTAGACGAATTACCTATACATGCATACAGTACACATTTTGAATTCAGTGGCTCTTTCTTGAATGCACGCATGATTGAACCTTCCAATGAAAGATGGGATACTTCAATCCCTTGTGCCTTTTTATATTTATTATAACATAATAAACATCATTC

Ace file of the UniGene sp_v1.1_unigene24173

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alliin lyase precursor, putative (EC:4.4.1.4)	-	-	50%
FL-Next	sp=Tryptophan aminotransferase-related protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	alliin lyase	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	gynoecium development	GO:0048467	Biological Process	69%
Blast2go	indoleacetic acid biosynthetic process	GO:0009684	Biological Process	69%
Blast2go	positive gravitropism	GO:0009958	Biological Process	69%
Blast2go	primary root development	GO:0080022	Biological Process	69%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	69%
Blast2go	cotyledon development	GO:0048825	Biological Process	69%
Blast2go	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	69%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	69%
Blast2go	maintenance of root meristem identity	GO:0010078	Biological Process	69%
Blast2go	catalytic activity	GO:0003824	Molecular Function	69%

Source	InterPros	Term	Type	Identity
Blast2go	EGF-like, alliinase	IPR006947	-	69%
Blast2go	Allinase, C-terminal	IPR006948	-	69%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	69%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	69%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q94A02

Fln msg: your sequence is longer than subject: 539 - 440

Fln protein: MAPPKLRSRHKLNMNHLVKEGKQQQQHLENKGYFPFSLMPMPGSMNSKYLICLSMAVNVCLLTSLLYEKNYHPITIPRNLWGKGKLWVNNVCMPPQESEASTVCAVDDPTHNIAVATAGGRATCSGHGYYVGNSVSPSQQALSGGFCKCHACFTDHNCSTLVSDCVLHLEQGDPTMFESFWIKNGQKSTTVILGWQLMSYFADVGNVCWFLEPELAKEIRSLHSLAGNAVTKGRHIVVGTGSTQLFQAALYALSPPGRSRPTNVISAAPYYSSYPLETDYLKSEIYKWAGDAWTYKQTSDEDYYIELVTSPNNPDGFTREAVVNGSGPVIYDLAYYWPHYTPITAPADQDLMLFTLSKITGHAGSRIGWAIVNDLEVAKKMTEYIMLNTIGVSKESQLRAAQILHSVSNSYAGERTFDRQRYLSTEQEHRFFHYGYTLMSERWNSLRHAVSLNHRFTLPAFEPAFCNFFGHHTTPRPAFAWLKCEGKEDEDCEKLLKSNGIISRGGRHFGAPQTYVRLSILDRNQIFNILLDRLSSIH*

Protein Length: 540

Fln nts: ATGGGGGAATATCGTCTGAGAATCAATGGAATGAGAGAACGCATTCAGCATCATCCTGGTCAACAAAGTCAAAATAGGCTGGAGGGAAACATGCAGGAATATGTCGTGACCTTGGGTTTCATTGAACTTAGTGTATTTTGTTGCTTCTCTTACCACAATGCTGAACATCATTCCCTCGTTCTCTCTGAGTGAAGGCTAGGCAGAAGTATGGGTCGACCATAGCTTTGAGATTCAGATTCAGAATAC_-_ATGGCACCCCCAAAGCTTAGAAGCAGACATAAGCTCAACATGAACCATTTAGTAAAAGAAGGAAAGCAGCAGCAGCAGCATTTGGAAAATAAGGGTTACTTTCCCTTCTCTTTAATGCCAATGCCAGGCAGTATGAATAGCAAATACTTAATATGTCTTTCCATGGCAGTGAATGTCTGTCTTCTCACTAGTTTGCTATATGAGAAAAACTACCATCCCATTACAATACCCAGAAACTTGTGGGGGAAAGGGAAATTATGGGTTAACAACGTGTGTATGCCTCCACAAGAAAGCGAAGCAAGCACAGTATGTGCAGTGGATGATCCAACGCATAATATTGCAGTTGCTACTGCAGGAGGTCGGGCGACATGCTCTGGCCATGGCTACTATGTTGGTAATAGTGTTTCTCCTTCTCAGCAAGCTTTAAGTGGCGGCTTCTGTAAATGCCATGCCTGCTTCACAGATCACAACTGTTCCACTCTCGTCTCCGACTGTGTCCTCCACCTTGAACAAGGAGACCCAACAATGTTTGAATCATTTTGGATCAAGAACGGGCAAAAGAGTACGACCGTGATTTTGGGTTGGCAGCTGATGAGTTACTTTGCAGATGTGGGAAACGTATGCTGGTTTTTAGAGCCAGAATTAGCAAAAGAGATCAGATCTCTTCACAGTCTTGCCGGAAATGCTGTAACAAAAGGCCGCCATATAGTGGTAGGTACAGGTTCAACGCAGCTCTTTCAAGCTGCACTGTATGCCTTATCACCCCCAGGTCGTTCCAGACCAACAAATGTTATTTCTGCGGCACCCTACTACTCGTCTTATCCATTGGAAACAGACTATTTGAAATCAGAGATCTACAAATGGGCTGGTGATGCCTGGACGTACAAGCAGACCTCAGATGAAGATTACTACATTGAGTTGGTAACTTCTCCTAATAACCCTGATGGGTTTACCAGGGAAGCAGTTGTAAATGGCTCTGGACCAGTTATATACGATTTAGCCTATTACTGGCCACATTACACCCCCATCACTGCTCCCGCAGATCAGGATCTTATGTTGTTCACGTTATCTAAAATTACAGGTCATGCAGGAAGCCGCATTGGGTGGGCTATTGTCAATGATTTGGAAGTGGCTAAAAAGATGACAGAATACATAATGCTGAATACCATTGGAGTTTCGAAGGAATCACAGTTGCGGGCCGCTCAAATATTGCACTCTGTCAGCAATAGTTATGCAGGGGAGAGAACGTTTGACAGACAAAGATACTTAAGCACAGAGCAAGAACATAGATTCTTTCATTATGGGTATACTTTAATGTCAGAGAGATGGAATAGCCTTCGACATGCAGTCAGCCTCAATCACCGCTTCACTTTGCCTGCATTTGAGCCAGCATTTTGCAACTTTTTTGGTCACCACACCACTCCTCGACCAGCTTTTGCATGGCTAAAATGTGAAGGAAAGGAGGATGAAGATTGTGAAAAGTTATTGAAAAGCAATGGAATCATCTCTCGCGGTGGGAGGCATTTTGGTGCACCCCAAACATATGTGAGGTTGAGTATCCTTGACAGAAATCAGATCTTCAATATTCTGTTGGACAGGCTGTCATCTATTCATTGA___TGATTACTTGAATCTCATCATAATCCCTGTTTGATTGCTCCACTGTTCATTCGTTTAAGGAGTAAATGTATGAGCAGCGTCGTTGTAATTTTTGTTGCTAGACGAATTACCTATACATGCATACAGTACACATTTTGAATTCAGTGGCTCTTTCTTGAATGCACGCATGATTGAACCTTCCAATGAAAGATGGGATACTTCAATCCCTTGTGCCTTTTTATATTTATTATAACATAATAAACATCATTC

Fln Alignment:

sp_v1.1_unigene24173___DCVLHLEQGDPTMFESFWIKNGQKSTTVILGWQLMSYFADVGNVCWFLEPELAKEIRSLHSLAGNAVTKGRHIVVGTGSTQLFQAALYALSPPGRSRPTNVISAAPYYSSYPLETDYLKSEIYKWAGDAWTYKQTSDEDYYIELVTSPNNPDGFTREAVVNGS-GPVIYDLAYYWPHYTPITAPADQDLMLFTLSKITGHAGSRIGWAIVNDLEVAKKMTEYIMLNTIGVSKESQLRAAQILHSVSNSYAGERTFDRQRYLSTEQEHRFFHYGYTLMSERWNSLRHAVSLNHRFTLPAFEPAFCNFFGHHTTPRPAFAWXXXXXXXXXXXXXXXXSNGIISRGGRHFGAPQTYVRLSILDRNQIFNILLDR
Q94A02_______________DRIINLKFGDPTVYERYWQENGEVTTMVIPGWQSLSYFSDENNLCWFLEPELAKEIVRVHKVVGNAVTQDRFIVVGTGSTQLYQAALYALSPHDDSGPINVVSATPYYSTYPLITDCLKSGLYRWGGDAKTYK---EDGPYIELVTSPNNPDGFLRESVVNSTEGILIHDLAYYWPQYTPITSPADHDVMLFTASKSTGHAGIRIGWALVKDRETARKMIEYIELNTIGVSKDSQLRVAKVLKVVSDS-CGNVT-----------GKSFFDHSYDAMYERWKLLKQAAKDTKRFSVPDFVSQRCNFFGRVFEPQPAFAWFKCEEGIVDCEKFLREEKKILTKSGKYFGDELSNVRISMLDRDTNFNIFLHR

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
156	80		20		0.995493
163	10			89	0.999919
441			28	71	1.0
446		33		66	1.0
473	50	50			1.0
486	50		50		1.0
1383	10		90		0.90298
1436	10		90		0.90298
1550		75		25	0.996473
1611		75	25		0.996473
1612	75		25		0.996473
1631	80		20		0.995493
1633			20	80	0.995493
1637		20	80		0.995493
1639		80		20	0.995493
1640	80			20	0.995493
1642		80	20		0.995493
1643	80	20			0.995493
1645			20	80	0.995493
1647		20		80	0.995493
1648	20		80		0.995493
1651	80			20	0.995493
1653	20			80	0.995493
1656		28		71	1.0
1657			28	71	1.0
1659		28	71		1.0
1662		71	28		1.0
1666	71			28	1.0
1667		71		28	1.0
1668	71		28		1.0
1669		71	28		1.0
1671	71			28	1.0
1672		71	28		1.0
1733		22	77		0.999999
1734			22	77	0.999999
1736	77	22			0.999999
1737			22	77	0.999999
1741	77	22			0.999999
1742	77	22			0.999999
1743	77			22	0.999999
1744			77	22	0.999999
1745		77	22		0.999999
1746	77		22		0.999999
1747	77	22			0.999999
1750		22	77		0.999999
1751	75	25			1.0
1752	58	16	25		1.0
1755	16		25		1.0
1756	75			25	1.0
1757			25	75	1.0
1758	25	75			1.0
1759		25		75	1.0
1762		75		25	1.0
1766		25	75		1.0
1769			75	25	1.0
1770		25	75		1.0
1772		25	75		1.0
1773			75	25	1.0
1787		66		33	1.0
1842		11		88	0.999937
1845		11		88	0.999937
1850	88			11	0.999937
2077	40	60			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
311	326	AGC AGC AGC AGC AGC A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain