SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24130

Length: 947 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24130

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein AINTEGUMENTA, putative n=1 Tax=Ricinus communis RepID=B9RM33_RICCO	-	-	78%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	81%
Blast2go	ap2 domain-containing transcription factor	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	0.0	83%
Blast2go	DNA-binding, integrase-type	IPR016177	-	0.0	83%

Full-Lengther Next Prediction

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
55	66	33			0.997452
57	66			33	0.997452
58	66			33	0.997452
60			66	33	0.997452
61		66	33		0.997452
63		33	66		0.997452
67		25	50	25	0.995533
69			75	25	0.996473
74	25			75	0.996473
76	75	25			0.996473
77		25		25	0.995533
80		25	75		0.996473
81	75	25			0.996473
83		75	25		0.996473
85		25		75	0.996473
86	25		75		0.996473
88			75	25	0.996473
89		25	75		0.996473
90	25	75			0.996473
204		87	12		1.0
206		12	87		1.0
207	87	12			1.0
208	87			12	1.0
209			87	12	1.0
211	79		12		1.0
212	87	12			1.0
213	87			12	1.0
214	88		12		1.0
215			88	12	1.0
218		12	88		1.0
219		88		12	1.0
220		12	88		1.0
221	12		88		1.0
498	81		6		0.999943
613	87	12			0.992554
614	87		12		0.992554
618			87	12	0.992554
623		12	87		0.992554
624		87		12	0.992554
625	87			12	0.992554
628	85	14			0.993533
631			85	14	0.993533
634			85	14	0.993533
635	83	16			0.994512
636	16			83	0.994512
651	83		16		0.994512
652			83	16	0.994512
655	83		16		0.994512
664		61	38		1.0
665	61			38	1.0
667	61		38		1.0
672	61	38			1.0
673			61	38	1.0
674		61		38	1.0
675	61		38		1.0
679			38	61	1.0
683		36		54	1.0
684	63			36	1.0
687	36	9			1.0
727	85			14	0.999981
935			88	11	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain