SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24126

Length: 1566 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24126

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	C2 domain-containing protein [Arabidopsis thaliana] gb\|AAL06551.1\|AF412098_1 AT4g34150/F28A23_90 [Arabidopsis thaliana] gb\|AAN31905.1\| unknown protein [Arabidopsis thaliana] gb\|AAT41866.1\| At4g34150 [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	68%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	68%
Blast2go	C2 membrane targeting protein	IPR018029	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P089

Fln msg: your sequence is longer than subject: 248 - 140

Fln protein: MATGGIQGQLLDITIVGCLQLRDTEWISRQDPYVCLEYANSKFRTKTCTDGGKNPSFNEKFVLRLIEGLREINVSVWNSNTVTTDDLISSGTVLLENVISSGYDDSTWPLQTKRGKYGGQVRLILHYPNAGKSKVQSQLSAPPHTCQLPAIAPYAPSTGYTPYQQPSSFYPGYPPMSSYQTPQTTAYPPPPSNVYPPPPAYYPPPGPAYLPSPYGTTPSAYPPAGYPPPGPQGTYPAQPYPGYYPGP*

Protein Length: 249

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCGAAATATATCATATCAGACAGACAGGACCGCTGAGACCGTACTCAAGCGCGTGTTGCAGTTTTGACCACATCAATATCGGGAATCAATCTCAATATTCTGTACCTAGTTGTGACTGTCGTTGCCTATTTAGGAGGATTCAAAGGGTCTGCAGCTTTTAGAATTCGTCACTCCAGTTCC_-_ATGGCCACAGGCGGAATTCAGGGTCAGCTCCTGGATATAACAATTGTGGGATGCCTCCAGCTGAGGGACACGGAGTGGATCTCCAGGCAAGACCCATATGTTTGCCTGGAATATGCTAACAGTAAATTCCGAACAAAAACTTGCACAGATGGTGGAAAGAATCCAAGTTTCAATGAGAAATTTGTTCTTCGTTTGATTGAAGGCCTTCGTGAAATAAATGTCTCTGTCTGGAATAGCAACACTGTAACAACTGATGATCTCATTAGCAGTGGCACAGTTCTTCTAGAGAACGTGATCTCAAGCGGGTATGATGATTCAACATGGCCACTGCAGACAAAAAGAGGAAAATATGGTGGGCAAGTGAGGCTCATCCTTCACTATCCAAATGCCGGGAAAAGTAAAGTGCAATCTCAGCTTTCAGCTCCTCCACATACATGCCAATTACCAGCTATTGCTCCATATGCACCATCGACAGGATATACACCATATCAGCAGCCATCTTCTTTCTATCCTGGATATCCACCAATGTCGAGTTATCAAACACCACAAACTACTGCATATCCTCCGCCTCCAAGTAATGTGTATCCTCCGCCTCCAGCTTACTACCCTCCGCCAGGTCCTGCATACCTGCCTTCTCCATATGGAACTACTCCATCAGCATACCCTCCAGCTGGGTATCCTCCGCCAGGACCACAAGGAACATATCCGGCACAGCCTTATCCAGGGTATTATCCAGGACCATAA___ACACCTTTGGTCCTTTTATAAATTGCTTGGGAGGTGCCTGGCTGGGGAGCTGTTCTTCAAAAGGTAGAGACCAGTCCTTTTTCGAAGCCTCTATAGTCGAGAGATCATGTAACTAACCTAGAAGTGCAAGGAGATATTCCATTTACTATTGGAGACGTTGACCTGGCATCTGGCTGGTGCACGCAGTTGGGAGAAGATAATATATATATTGGTAGATAAGCCTTTTGATGATTATTATTGGGCTGATAAGCTTTTTGATGATTATTGGGAGTGGATGAAGTTTAAATTATATTGGACCCTATGAACAAATTCTGTACGACTTATACGATTTTATGTAATTGCCCATATGCCATAACAGTAATGCTGGAAATAGTTGAGGATTAATTCCTTTGTGCTGCCCCCTTGGAAACATGTCTCAAGGTTGGGGTTTTGTACTGAATAACAGACATCCTTTGGCTTAGGTAGGTGCTAAATTTGAGGGGTATCTTTTGTTAAGTTTTCAAATTTTAATATTTCATTTGGGTAGCACAGATCAGAAGGGCGACAACTTCATCAATGAATCAATGCCCTGATGGAAAAGTTGCGCTTTTGAGATGTAAAAAATTGTTTGAATGAG

Fln Alignment:

sp_v1.1_unigene24126___LDITIVGCLQLRDTEWISRQDPYVCLEYANSKFRTKTCTDGGKNPSFNEKFVLRLIEGLREINVSVWNSNTVTTDDLISSGTVLLENVISSG
A9P089_______________LEVLLLNAKGLQTTDFLCKMDPYCIIKCRTQQQKSTVASDQGRNPEWNEKFLFNISEGVSDLVIRIMDKDTFTADDFIGEANIPLDGVFEAG

SNPs (tot: 3)

Position	C %	G %	T %	Probability
131	33	66		0.997452
145	66		33	0.997452
1277		33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain