SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24088

Length: 2197 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene24088
TCTATATAAACTGAACGGTAGTGAAGGGTATGGGGGTAGAGAGTTTGGTTCGTCAAATTTTATTTGTCCATTGAGGTAGCAGCAATGGATTTAATATCTGTCTTACCGTCGATTTCCAAATCGTGTGTGTGCCTGCACAAACCCTTGAGTAGTTGTACTCATAGGCTTAAGCCTTTCTGCAAAACAATACGGATTCTTGGAATGCCGAGGCGATGGAAATTTGCCAGGCCGTCGATGAGTCTGAGTACCGTTGCATCTGATGAAGATATACAAAGACGCACGGGCGGTTATCATTCCAACCTCTGGAACGATGATGTCATACAGTTTCTGTCAACGCCTTATGGGGAACTCGCTTACCGTGAACGTGCTGAGAGACTGATTGATGAAGTAAGGAACATATTCAGTTCGATGTCATTGGAAGATGGAGAATTCGGTGATCTGATCATTCAACGCCTTTGGATGGTCGATAACGTTGAACGTTTGGGGATCGATAGGCATTTCAAAAATGAGATCAAATCAGCGCTTGATTATGTTTACAGTTACTGGAGCGAAAAAGGCATTGGATGTGGGACAAAAAGTATTATTACTGATCTCAATTCAACTGCCTTGGGCTTTCGAACTCTTCGATTACACGGATACCCTGTTTCTGCAGAGGTTTTGAAACATTTCAGAAACCAAATTGGGCAGTTTGTATCATGTCCCAGTGAGACAGAGGAAGAGATAAGAAGCATTGTCAATTTATATCGGGCTTCCCTCATTGCCTTTCCCGGTGAGAAAGTTATGGAAGAGGCAGAAAGCTTCTCAGAGAAATATTTGAAGGAAACTCTGCAAAAGATTCCGGACTGCAGTCTTTCACGAGAGATAGGGGACGTTTTGGAACATGGTTGGCACACAAATTTGCCGCGATTCGAAGCAAGGAATTACATGGACGTCTTCGGACAGGACACTAAGAATATGGAGTCAAATAGGAAGACGGAGAAACTCTTAGAACTTGCGAAACTGGAGTTCAACATCTTTCAATCCATACAGAAGACAGAGTTAGAGTCCCTCTTGAGATGGTGGAATGATTCAGGTTCACCTCAGATTACCTTCACTCGACATCGCCACGTGGAGTACTACACTTTGGCTTCCTGCATCGCGTTTGAGCCCCAACATTCTGGATTCAGACTCGGCTTTGCGAAAGCGTGTCATATTATCACTGTTCTCGACGATATGTACGACCTCTTCGGAACAGTTGATGAGCTCAAACTGTTCACAGCCGCAATTAAGAGATGGGATCCGTCCGCCACAGATTGCCTTCCACAATATATGAAAGGAATTTACATGATGGTTTACAACACCGTAAATGAAATGTCTGCGGAGGCACAGAAGGCTCAAGGCCGAGACACTCTCAACTATGCTCGACAGGCTTGGGAGGATTATCTTGATTCGTATATGCAAGAAGCAAAGTGGATAGCCACGGGTTATCTGCCAACGTTCGAGGAATACTTGGAGAACGGGAAAGTTAGCTCTGGGCATCGCGTGTCGGCGTTGCAACCCATGCTGACGATGGACATCCCCTTTCCTCCTCACATCCTCAAGGAAGTTGACTTCCCATCCAACCTCAATGACTTGGCATGTGCCATACTTCGATTACGAGGTGATACCCGATGTTATCAGGAGGACAGGGCTCGTGGAGAAGAAACCTCGTGTATATCTTGTTATATGAAAGACAACCCTGGAGCAACAGAGGAAGATGCTCTTAATCATCTCAACGTCATGATCAGTGGCGTAATTAAAGAATTAAATTGGGAGCTTCTCAAACCCGACAACAGTGTGCCCATTTCTTCCAAGAAAATTACTTTTGACATTACCAGAGCTTTCCATTACGGTTACAAATACCGAGATGGCTACAGCGTTTCGAGCGTTGAAACAAAGAGTTTGGTGATGAGGACCCTCCTTGAACCTGTGCCTTTATAACCAAATCTAGAATTTACAAGAAGTTGATACTCTGTTTAGGTTAGCTAACTTAGGTCTATGATTTTACTGTTCAAGCTATGTTGTGGGTAAGATATCATATTACTGTTAAAAGTTGTGAATTTTAACACAGCTGCATGTATCTCAGTGGTTATTGTTTCCCATAACCTTCTCCCAGATTTACAGTATTGATATGCAGGTCATTATATAAAACTGTGTCATTATGTCGTTAACGAAAAAG

Ace file of the UniGene sp_v1.1_unigene24088 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-terpineol synthase n=1 Tax=Pinus taeda RepID=Q84KL4_PINTA	-	-	92%
FL-Next	tr=Alpha-terpineol synthase; Pinus taeda (Loblolly pine).	-	-	94%
Blast2go	beta-phellandrene synthase	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Terpene synthase-like	IPR001906	-	84%
Blast2go	Terpene synthase, metal-binding domain	IPR005630	-	84%
Blast2go	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid	IPR008930	-	84%
Blast2go	Terpenoid synthase	IPR008949	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q84KL4

Fln msg:

Fln protein: MDLISVLPSISKSCVCLHKPLSSCTHRLKPFCKTIRILGMPRRWKFARPSMSLSTVASDEDIQRRTGGYHSNLWNDDVIQFLSTPYGELAYRERAERLIDEVRNIFSSMSLEDGEFGDLIIQRLWMVDNVERLGIDRHFKNEIKSALDYVYSYWSEKGIGCGTKSIITDLNSTALGFRTLRLHGYPVSAEVLKHFRNQIGQFVSCPSETEEEIRSIVNLYRASLIAFPGEKVMEEAESFSEKYLKETLQKIPDCSLSREIGDVLEHGWHTNLPRFEARNYMDVFGQDTKNMESNRKTEKLLELAKLEFNIFQSIQKTELESLLRWWNDSGSPQITFTRHRHVEYYTLASCIAFEPQHSGFRLGFAKACHIITVLDDMYDLFGTVDELKLFTAAIKRWDPSATDCLPQYMKGIYMMVYNTVNEMSAEAQKAQGRDTLNYARQAWEDYLDSYMQEAKWIATGYLPTFEEYLENGKVSSGHRVSALQPMLTMDIPFPPHILKEVDFPSNLNDLACAILRLRGDTRCYQEDRARGEETSCISCYMKDNPGATEEDALNHLNVMISGVIKELNWELLKPDNSVPISSKKITFDITRAFHYGYKYRDGYSVSSVETKSLVMRTLLEPVPL*

Protein Length: 626

Fln nts: TCTATATAAACTGAACGGTAGTGAAGGGTATGGGGGTAGAGAGTTTGGTTCGTCAAATTTTATTTGTCCATTGAGGTAGCAGCA_-_ATGGATTTAATATCTGTCTTACCGTCGATTTCCAAATCGTGTGTGTGCCTGCACAAACCCTTGAGTAGTTGTACTCATAGGCTTAAGCCTTTCTGCAAAACAATACGGATTCTTGGAATGCCGAGGCGATGGAAATTTGCCAGGCCGTCGATGAGTCTGAGTACCGTTGCATCTGATGAAGATATACAAAGACGCACGGGCGGTTATCATTCCAACCTCTGGAACGATGATGTCATACAGTTTCTGTCAACGCCTTATGGGGAACTCGCTTACCGTGAACGTGCTGAGAGACTGATTGATGAAGTAAGGAACATATTCAGTTCGATGTCATTGGAAGATGGAGAATTCGGTGATCTGATCATTCAACGCCTTTGGATGGTCGATAACGTTGAACGTTTGGGGATCGATAGGCATTTCAAAAATGAGATCAAATCAGCGCTTGATTATGTTTACAGTTACTGGAGCGAAAAAGGCATTGGATGTGGGACAAAAAGTATTATTACTGATCTCAATTCAACTGCCTTGGGCTTTCGAACTCTTCGATTACACGGATACCCTGTTTCTGCAGAGGTTTTGAAACATTTCAGAAACCAAATTGGGCAGTTTGTATCATGTCCCAGTGAGACAGAGGAAGAGATAAGAAGCATTGTCAATTTATATCGGGCTTCCCTCATTGCCTTTCCCGGTGAGAAAGTTATGGAAGAGGCAGAAAGCTTCTCAGAGAAATATTTGAAGGAAACTCTGCAAAAGATTCCGGACTGCAGTCTTTCACGAGAGATAGGGGACGTTTTGGAACATGGTTGGCACACAAATTTGCCGCGATTCGAAGCAAGGAATTACATGGACGTCTTCGGACAGGACACTAAGAATATGGAGTCAAATAGGAAGACGGAGAAACTCTTAGAACTTGCGAAACTGGAGTTCAACATCTTTCAATCCATACAGAAGACAGAGTTAGAGTCCCTCTTGAGATGGTGGAATGATTCAGGTTCACCTCAGATTACCTTCACTCGACATCGCCACGTGGAGTACTACACTTTGGCTTCCTGCATCGCGTTTGAGCCCCAACATTCTGGATTCAGACTCGGCTTTGCGAAAGCGTGTCATATTATCACTGTTCTCGACGATATGTACGACCTCTTCGGAACAGTTGATGAGCTCAAACTGTTCACAGCCGCAATTAAGAGATGGGATCCGTCCGCCACAGATTGCCTTCCACAATATATGAAAGGAATTTACATGATGGTTTACAACACCGTAAATGAAATGTCTGCGGAGGCACAGAAGGCTCAAGGCCGAGACACTCTCAACTATGCTCGACAGGCTTGGGAGGATTATCTTGATTCGTATATGCAAGAAGCAAAGTGGATAGCCACGGGTTATCTGCCAACGTTCGAGGAATACTTGGAGAACGGGAAAGTTAGCTCTGGGCATCGCGTGTCGGCGTTGCAACCCATGCTGACGATGGACATCCCCTTTCCTCCTCACATCCTCAAGGAAGTTGACTTCCCATCCAACCTCAATGACTTGGCATGTGCCATACTTCGATTACGAGGTGATACCCGATGTTATCAGGAGGACAGGGCTCGTGGAGAAGAAACCTCGTGTATATCTTGTTATATGAAAGACAACCCTGGAGCAACAGAGGAAGATGCTCTTAATCATCTCAACGTCATGATCAGTGGCGTAATTAAAGAATTAAATTGGGAGCTTCTCAAACCCGACAACAGTGTGCCCATTTCTTCCAAGAAAATTACTTTTGACATTACCAGAGCTTTCCATTACGGTTACAAATACCGAGATGGCTACAGCGTTTCGAGCGTTGAAACAAAGAGTTTGGTGATGAGGACCCTCCTTGAACCTGTGCCTTTATAA___CCAAATCTAGAATTTACAAGAAGTTGATACTCTGTTTAGGTTAGCTAACTTAGGTCTATGATTTTACTGTTCAAGCTATGTTGTGGGTAAGATATCATATTACTGTTAAAAGTTGTGAATTTTAACACAGCTGCATGTATCTCAGTGGTTATTGTTTCCCATAACCTTCTCCCAGATTTACAGTATTGATATGCAGGTCATTATATAAAACTGTGTCATTATGTCGTTAACGAAAAAG

Fln Alignment:

sp_v1.1_unigene24088___MDLISVLPSISKSCVCLHKPLSSCTHRLKPFCKTIRILGMPRRWKFARPSMSLSTVASDEDIQRRTGGYHSNLWNDDVIQFLSTPYGELAYRERAERLIDEVRNIFSSMSLEDGEFGDLIIQRLWMVDNVERLGIDRHFKNEIKSALDYVYSYWSEKGIGCGTKSIITDLNSTALGFRTLRLHGYPVSAEVLKHFRNQIGQFVSCPSETEEEIRSIVNLYRASLIAFP----GEKVMEEAESFSEKYLKETLQKIPDCSLSREIGDVLEHGWHTNLPRFEARNYMDVFGQDTKNMESNRXXXXXXXXXXXEFNIFQSIQKTELESLLRWWNDSGSPQITFTRHRHVEYYTLASCIAFEPQHSGFRLGFAKACHIITVLDDMYDLFGTVDELKLFTAAIKRWDPSATDCLPQYMKGIYMMVYNTVNEMSAEAQKAQGRDTLNYARQAWEDYLDSYMQEAKWIATGYLPTFEEYLENGKVSSGHRVSALQPMLTMDIPFPPHILKEVDFPSNLNDLACAILRLRGDTRCYQEDRARGEETSCISCYMKDNPGATEEDALNHLNVMISGVIKELNWELLKPDNSVPISSKKITFDITRAFHYGYKYRDGYSVSSVETKSLVMRT
Q84KL4_______________MDLISVLPSASKSCVCLHKPLSSSTHKLKPFCKTIRILVMPRRWEFARPSMSLSTVASEDDIQRRTGGYLSNLWNDDVIQFLSTPYGELAYRERAERLIDEVRDIFSSMSLEDGEFSDLI-QRLWMVDNVERLGIDRHFKNEIKSALDYVYSYWSEKGIGCGTKSIITNLNSTALGFRTLRLHGYPVSADVLKHFRNQIGQFVSCPSETEEDIRIMVNLYRASLIAFPVAFPGEKVMEEAESFSEKYLKETLQKIPDCSLSREIGDVLEHGWHTNLPRLEARNYIDVFGQDTKNMEPNRKTEKLLELAKLEFNIFQSIQKTELESLLRWWNDSGSPQITFTRHRHVEYYTLASCIAFEPQHSGFRLGFAKACHILTVLDDMYDLFGTVDELKLFTAAIKRWDPSATDCLPQYMKGIYMMVYNTVNEMSAEAQKAQGRDTLNYARQAWEDCLDSHMQEAKWIATGFLPTFEEYLENGKVSSAHRVSALQPMLTMDIPFPPHILKEVDFPSNLNDLACAMLRLRGDTRCYQADRARGEETSCISCYMKDNPGATEEDALNHLNVMISGVIKELNWELLKPNSSVPISSKKINFDITRAFHYGYKYRDGYSVSSVETKSLVMRT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
732		25		75	0.996473
737	75	25			0.996473
743			75	25	0.996473
757	25	75			0.996473
854			33	66	0.997452
856		66		33	0.997452
2085	62		37		1.0
2086		37		62	1.0
2095	85	14			0.993533
2133	66		33		1.0
2159	33	66			0.997452
2165		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain