SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24082

Length: 2415 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24082
CGTCGTGACCTTGGCTGTCACTCAAGTTTTTTTTCCTCACATGAGAAACATCTAGAACTTTTGGAGTCGCTTGTGCATAATATAAAATCAATCGTCGTGACCTTGGCTGTCACTCTAGCCGTTTCATTGGTTGTTTGCTAAGAGTTCAGAGTGTAATACTGCGCATCTGTTTGGCTTCCGATTCTGTTTATCTTCGTAACATTTCAAGTGTGTAATCTTCATCAGCAACGTTGCAATGGCGGACGATTTTGAACTTCCTGAAGGTGCTGGAATGATGGAAAACGAGGACTTTGGCGATACTGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGGAAGCAGGGGTTGAAGAAATTGTTGGTTAAAGAAGGGGAATCGTGGGAAACACCCGAAACCGGTGATGAAGTTGAAGTTCATTACACCGGAACTCTTCTGGACGGTACAAAGTTCGATTCTAGTCGGGATAGAGGAACTCCGTTCAAGTTCAAGCTTGGTCAAGGTCAAGTAATCAAAGGATGGGATCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCAGTCTTCACCATTCCTCCTGATCTGGCATATGGGGAATCGGGATCGCCACCTACAATTCCACCCAATGCGACTCTGAAATTTGATGTTGAATTGCTCTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGGGGCATTTTTAAGAAAATTATCAAGGAAGGGGAGAAATGGGAGCACCCAAAAGAAGCTGATGAAGTTTTGGTTAAATACGAGGCTAGACTGGAGGACAGAACTGTTGTATCAAAATCAGAGGAGGGTGTGGAGTTTTATGTAAAGGATGGATATTTCTGTCCAGCTTTTGCCATAGCTGTCAAAACAATGAAGAAGGGAGAAAAAGTATTGTTGACAGTGAAGCCTCAGTATGGTTTTGGACATCAAGGACGCGAAGCAATTGGAAATGATGTTGCCGTTCCACCAAATGCAACATTGTTGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTTACTGATGATAAGAAAGTGCTGAAGAAAATCCTGAAGCAAGGAGAAGGTTATGAACGACCTAATGATGGGGCAGTGGTTAAAGTGAAATACACGGGGAAGTTAGAGGATGGCACCATATTTGAGGAAAAGGGATCTGATGAAGAACCATTTGAGTTTATGGCTGGAGAAGAGCAAGTTGTTGATGGATTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAACTTGCCTTGGTGAGTGTGGCAGCTGAATATGGTTACCAAACTGAGATTAAGACAGACTTGGCAGTTGTTCCACCAAAGGCCACCTTGATTTATGAAGTGGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGAACACCGAGGAGAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGCAATGCATTATTTAAGGTTGGCAAGTATTTTAGGGCTTCCAAGAAATATGAAAAGGCTGCAAAGTATATTGAGTATGACACTTCATTCAGCGAGGAAGAGAAGAAGCAGTCGAAGCCCTTGAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACACAAGCAGAAAAATTATGTACAAAGGTTTTGGAGGTTGAATCGCAAAATGTTAAGGCTTTATATAGAAGAGCACAAGCATACATTCAGACAGCAGATTTGGAGCTCGCAGAGCTGGACATAAAGAAAGCACTCGAGATTGACCCAAACAACAGGGATGTGAAGCTCGAGTACAGGGCTCTCAAAGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTTTATGGCAACATGTTTGCAAGAATGAGCAAGTTGGAGGAATTAGAAAGCAGGAAATCTGGGAGCCAAAAAGTGGAGACAGCTAATAAAGAGGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTGCCTGAAGTGCTTTTGCAATAGCGATATATTTCTATGCAGTCCTTTATAGACGAGTCTACCTTTTAGCCATTCACAATGAAGATTGTAAGTCGGGTGAACTTTTTAACCACGCTAGGTTGATCTATTTGAAGACTCTTTTGCAAGATGCTTGTGCATTCATAGCAAAATTGTATGAGGGACTGGCAAGCTGAATTTGCTTGAAAGTGATGAAAGAGGTTGTATTCTTGAAGTATTGCTTTGCTCTTAATCTAATTGGCTTAGGTAATGAAGCTCTTGGTTTTTGTTGAATAATATGAAGCATGAATGTCACAACTGCATTGATAACGTTAGGCTGTGATGTTTGAAATGAAGCCGGACACATAATTTCTTTATTGCAAAATTTCGATGCTCTGAATGGGTTTAAAGTTCATTTTAATATATAGCATAAGCAAATATGTTGTACCGTTTC

Ace file of the UniGene sp_v1.1_unigene24082

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl isomerase n=1 Tax=Zea mays RepID=B6TI78_MAIZE	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	peptidylprolyl isomerase	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	85%
Blast2go	response to heat	GO:0009408	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	cytoplasm	GO:0005737	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	85%
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	85%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	85%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	85%
Blast2go	Tetratricopeptide repeat	IPR019734	-	85%
Blast2go	Elongated TPR repeat-containing domain	IPR023114	-	85%
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type	IPR023566	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUZ0

Fln msg:

Fln protein: MADDFELPEGAGMMENEDFGDTVFKVGEEKEIGKQGLKKLLVKEGESWETPETGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQVIKGWDQGIATMKKGENAVFTIPPDLAYGESGSPPTIPPNATLKFDVELLSWASVKDICKDGGIFKKIIKEGEKWEHPKEADEVLVKYEARLEDRTVVSKSEEGVEFYVKDGYFCPAFAIAVKTMKKGEKVLLTVKPQYGFGHQGREAIGNDVAVPPNATLLVDLELVSWKVVDEVTDDKKVLKKILKQGEGYERPNDGAVVKVKYTGKLEDGTIFEEKGSDEEPFEFMAGEEQVVDGLDRAVMTMKKGELALVSVAAEYGYQTEIKTDLAVVPPKATLIYEVELVSFVKEKESWDMNTEEKIEAAGKKKEEGNALFKVGKYFRASKKYEKAAKYIEYDTSFSEEEKKQSKPLKVTCNLNNAACKLKLKDYTQAEKLCTKVLEVESQNVKALYRRAQAYIQTADLELAELDIKKALEIDPNNRDVKLEYRALKEKQKEYNKKEAKFYGNMFARMSKLEELESRKSGSQKVETANKEEGSDAMAVDGESA*

Protein Length: 580

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTTTTTCCTCACATGAGAAACATCTAGAACTTTTGGAGTCGCTTGTGCATAATATAAAATCAATCGTCGTGACCTTGGCTGTCACTCTAGCCGTTTCATTGGTTGTTTGCTAAGAGTTCAGAGTGTAATACTGCGCATCTGTTTGGCTTCCGATTCTGTTTATCTTCGTAACATTTCAAGTGTGTAATCTTCATCAGCAACGTTGCA_-_ATGGCGGACGATTTTGAACTTCCTGAAGGTGCTGGAATGATGGAAAACGAGGACTTTGGCGATACTGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGGAAGCAGGGGTTGAAGAAATTGTTGGTTAAAGAAGGGGAATCGTGGGAAACACCCGAAACCGGTGATGAAGTTGAAGTTCATTACACCGGAACTCTTCTGGACGGTACAAAGTTCGATTCTAGTCGGGATAGAGGAACTCCGTTCAAGTTCAAGCTTGGTCAAGGTCAAGTAATCAAAGGATGGGATCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCAGTCTTCACCATTCCTCCTGATCTGGCATATGGGGAATCGGGATCGCCACCTACAATTCCACCCAATGCGACTCTGAAATTTGATGTTGAATTGCTCTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGGGGCATTTTTAAGAAAATTATCAAGGAAGGGGAGAAATGGGAGCACCCAAAAGAAGCTGATGAAGTTTTGGTTAAATACGAGGCTAGACTGGAGGACAGAACTGTTGTATCAAAATCAGAGGAGGGTGTGGAGTTTTATGTAAAGGATGGATATTTCTGTCCAGCTTTTGCCATAGCTGTCAAAACAATGAAGAAGGGAGAAAAAGTATTGTTGACAGTGAAGCCTCAGTATGGTTTTGGACATCAAGGACGCGAAGCAATTGGAAATGATGTTGCCGTTCCACCAAATGCAACATTGTTGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTTACTGATGATAAGAAAGTGCTGAAGAAAATCCTGAAGCAAGGAGAAGGTTATGAACGACCTAATGATGGGGCAGTGGTTAAAGTGAAATACACGGGGAAGTTAGAGGATGGCACCATATTTGAGGAAAAGGGATCTGATGAAGAACCATTTGAGTTTATGGCTGGAGAAGAGCAAGTTGTTGATGGATTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAACTTGCCTTGGTGAGTGTGGCAGCTGAATATGGTTACCAAACTGAGATTAAGACAGACTTGGCAGTTGTTCCACCAAAGGCCACCTTGATTTATGAAGTGGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGAACACCGAGGAGAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGCAATGCATTATTTAAGGTTGGCAAGTATTTTAGGGCTTCCAAGAAATATGAAAAGGCTGCAAAGTATATTGAGTATGACACTTCATTCAGCGAGGAAGAGAAGAAGCAGTCGAAGCCCTTGAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACACAAGCAGAAAAATTATGTACAAAGGTTTTGGAGGTTGAATCGCAAAATGTTAAGGCTTTATATAGAAGAGCACAAGCATACATTCAGACAGCAGATTTGGAGCTCGCAGAGCTGGACATAAAGAAAGCACTCGAGATTGACCCAAACAACAGGGATGTGAAGCTCGAGTACAGGGCTCTCAAAGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTTTATGGCAACATGTTTGCAAGAATGAGCAAGTTGGAGGAATTAGAAAGCAGGAAATCTGGGAGCCAAAAAGTGGAGACAGCTAATAAAGAGGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTGCCTGA___AGTGCTTTTGCAATAGCGATATATTTCTATGCAGTCCTTTATAGACGAGTCTACCTTTTAGCCATTCACAATGAAGATTGTAAGTCGGGTGAACTTTTTAACCACGCTAGGTTGATCTATTTGAAGACTCTTTTGCAAGATGCTTGTGCATTCATAGCAAAATTGTATGAGGGACTGGCAAGCTGAATTTGCTTGAAAGTGATGAAAGAGGTTGTATTCTTGAAGTATTGCTTTGCTCTTAATCTAATTGGCTTAGGTAATGAAGCTCTTGGTTTTTGTTGAATAATATGAAGCATGAATGTCACAACTGCATTGATAACGTTAGGCTGTGATGTTTGAAATGAAGCCGGACACATAATTTCTTTATTGCAAAATTTCGATGCTCTGAATGGGTTTAAAGTTCATTTTAATATATAGCATAAGCAAATATGTTGTACCGTTTC

Fln Alignment:

sp_v1.1_unigene24082___MADDFELPEGAGMMENEDFGDTVFKVGEEKEIGKQGLKKLLVKEGESWETPETGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQVIKGWDQGIATMKKGENAVFTIPPDLAYGESGSPPTIPPNATLKFDVELLSWASVXXXXXXXXXXXXXXXXXXXWEHPKEADEVLVKYEARLEDRTVVSKSEEGVEFYVKDGYFCPAFAIAVKTMKKGEKVLLTVKPQYGFGHQGREAIGNDVAVPPNATLLVDLELVSWXXXXXXXXXXXXXXXILKQGEGYERPNDGAVVKVKYTGKLEDGTIFEEKGSDEEPFEFMAGEEQVVDGLDRAVMTMKKGELALVSVAAEYGYQTEIKTDLAVVPPKATLIYEVELVSFVKEKESWDMNTXXXXXXXXXXXXXXNALFKVGKYFRASXXXXXXXXXXXXDTSFSEEEKKQSKPLKVTCNLNNAACKLKLKDYTQAEKLCTKVLEVESQNVKALYRRAQAYIQTADLELAELDIKKALEIDPNNRDVKLEYRALKEKQKEYNKKEAKFYGNMFARMSKLEELESRKSGSQKVETANKEEGSDAMAVDGE
A9NUZ0_______________MEDDFELPEGAGLMENEDLNETVFKVGEEKEIGKQGLKKLLVKEGEGWETPETGDEVEVHYTGTLLDSTKFDSSRDRGTPFKFKLGQGQVIKGWDQGIATMKKGETAVFTIPPEMAYGESGSPPTIPPNATLKFDVELLSWASVKDICKDGGIFKKIIKEGEKWENPKEADEVLVKYEARLEDGTVVSKSEEGVEFYVKDGYFCPAFAKAVKTMKKGEKVLLTVKPQYGFGHKGRQAIGNDVAVPPNATLMVDLELVSWKVVDEVTDDKKVLKKILKQGEGYERPNDGAVAKVKYTGKLEDGTVFEKKGSDEEPFEFMTGEEQVVDGLDRAVMTMKKGEVALVTVAAEYGYETEIKTDLAVVPPKSTLIYDVELVSFVKEKESWDMSTAEKIEAAGKKKEEGNALFKVGKYFRASKKYKKAAKYIEYDTSFSEEEKKQSKPLKITCNLNNAACKLKLKDYTQAEKLCTKVLEIESQNVKALYRRAQSYIQTADLELAEIDIKKALEIDPNNRDVKLEYRALKEKQKEYNKKEAKFYGNMFARMSKLEELESRKSGSQKVETVDKVEGSDAMAVNGD

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
97			66	33	0.997452
99		33	66		0.997452
100	66	33			0.997452
103		33		66	0.997452
105		33	66		0.997452
106			66	33	0.997452
107		66		33	0.997452
108		33		66	0.997452
109	33		66		0.997452
111		66		33	0.997452
112	66			33	0.997452
114			33	66	0.997452
116	33			66	1.0
119		33		66	1.0
144	36		63		1.0
155	59	36			1.0
276			11	88	1.0
421		59		40	1.0
646	88	11			0.923564
652		88	11		0.923564
656	11			88	0.923564
657		11	88		0.923564
658			88	11	0.923564
659		11	88		0.923564
660	11	88			0.923564
961		3		96	0.991164
963		94		5	0.999996
967			3	96	0.991825
968	3	96			0.991825
970	96	3			0.99245
971		96		3	0.99245
972		96		3	0.99245
973	96		3		0.99245
974	96		3		0.99245
975	96	3			0.99245
980	96			3	0.99245
1119	80			20	1.0
1125		12	87		0.999964
1127	87			12	0.999964
1128	81	12			0.999943
1131			12	87	0.999964
1133		12	87		0.999964
1134	87	12			0.999964
1135			87	12	0.999964
1137	86		13		0.999973
1140	6		80	13	0.999961
1143		83		16	0.999991
1264			91	8	0.999807
1783		73	26		1.0
1914	89			10	0.999919
2004		92	8		0.999766
2159	91	2			0.995208
2268			23	76	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain