SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24079

Length: 1358 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24079

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S2, putative n=2 Tax=Ricinus communis RepID=B9RIB2_RICCO	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	0.0	95%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	95%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S5	IPR000851	-	95%
Blast2go	Ribosomal protein S5, C-terminal	IPR005324	-	95%
Blast2go	Ribosomal protein S5, eukaryotic/archaeal	IPR005711	-	95%
Blast2go	Ribosomal protein S5, N-terminal	IPR013810	-	95%
Blast2go	Double-stranded RNA-binding-like	IPR014720	-	95%
Blast2go	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	95%
Blast2go	Ribosomal protein S5, N-terminal, conserved site	IPR018192	-	95%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMF2

Fln msg:

Fln protein: MAERGGRGGDRGGGFGRGFGRGRGDRGRGDRRGGRRARRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVETMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKALVLEDVEKEVLL*

Protein Length: 278

Fln nts: CTGCCAGGGTTCTGTGTTTCCAAGGGTTTTCTGCTAGGGCCGAGGGTTGCTAGGGTTTTACAGATTTATCAGA_-_ATGGCGGAAAGGGGAGGACGCGGAGGGGACAGGGGAGGTGGATTCGGACGCGGATTTGGCCGAGGCCGAGGTGACAGAGGTCGCGGGGACCGTCGCGGCGGCCGGCGAGCCCGAAGAGACGAAGAAGAAAAATGGGTGCCCGTGACGAAGCTTGGCCGCTTGGTAAAAGAAGGGAAAATCCGTTCCCTCGAGCAAATCTATCTTTTCTCGTTGGCTGTAAAGGAGCACCAGATTGTGGAGACCATGCTGGGTCCTCAGCTGAAGGATGAGGTTATGAAGATCATGCCTGTGCAGAAGCAAACGAGGGCCGGACAGAGGACTCGATTCAAAGCATTCGTTGTTGTGGGTGACGGCAATGGTCACGTAGGGCTTGGGGTCAAGTGCAGCAAGGAGGTGGCCACGGCCATCCGCGGAGCCATTATTTTGGCGAAGCTTTCGGTTATTCCCGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATACTGTGCCTGTTAAGGTCACAGGGAAGTGCGGCTCTGTTACCGTCAGAATGGTGCCAGCGCCTAGAGGTGCCGGGATAGTGGCCGCGCGTGTGCCCAAGAAGGTTCTGCAGTTTGCTGGGATTGAAGATGTGTTCACCTCCTCTCGAGGGTCCACCAAGACGTTAGGAAATTTCGTGAAGGCAACCTTTGAGTGTCTCTTAAAGACTTACGGATTTTTGACACCTGATCTGTGGAGGGAGACCCGGTTCTCAAAATCTCCTTTCCAGGAATACACTGATTTACTGGCTAAGCCTGCTAAGGCCCTCGTCCTTGAAGATGTTGAGAAGGAGGTTTTACTATAA___ATTCCTTGTATTTTGACGAGGCGAGACTTTGTTTTCAAGTAAGATGCGACATCTTAAATTGAGAGTGACAACTTAGGCCGGGACAGAATTACAGCACTCTTTATATATGGTTTTCTTCAGTGTTGGTTTTAGTCAATTTTGTAGAGATGCGATGGATCTGATACAATATATTCGATTTTCAATTATCGTCGACACTTTTAAAACTTCACCCAGCTATTTTTTAAAACTTCACCCAGCTATTGTTTGGAGTTCGGATGCCTATTTTTATACATTATTGAGTTGTTGTGATTTCTTATAGCATTTTGTGCTACCAAGTATTGTTTTGAAATCATGCTAACATCATTCTTGGGGGCACAGGTCAATGTTGTTAAGTACAATTTAATTCACACTTCAATGTTATGAAGTGCATTTTATTTAAGTGCGTGCTTTGATATATAATTCATTCTTAGCGGCC

Fln Alignment:

sp_v1.1_unigene24079___EEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVETMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKA
A9NMF2_______________EEEKWVPVTKLGRLVKEGKIRSLEQIYLFSLAVKEHQIVEAMLGPQLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPVKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDLWRETRFSKSPFQEYTDLLAKPAKA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
235	86		13		1.0
530	26		73		1.0
531	26		73		1.0
532	26			73	1.0
533			26	73	1.0
877	85		14		0.993533
879	85		14		0.993533
1164	20	80			0.995493
1236		80	20		0.995493
1237	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain