SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24038

Length: 903 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24038

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative wuschel homeobox protein WOX2 n=1 Tax=Pinus sylvestris RepID=C3W8A2_PINSY	-	-	90%
FL-Next	tr=Putative wuschel homeobox protein WOX2; Pinus sylvestris (Scots pine).	-	-	96%
Blast2go	wox2 protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	68%
Blast2go	apical cell fate commitment	GO:0010654	Biological Process	68%
Blast2go	cotyledon development	GO:0048825	Biological Process	68%
Blast2go	positive regulation of cell proliferation	GO:0008284	Biological Process	68%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain	IPR001356	-	68%
Blast2go	Homeodomain-like	IPR009057	-	68%
Blast2go	Homeodomain-related	IPR012287	-	68%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
420	88	11			0.923564
422	88			11	0.923564
424	11		88		0.923564
426	88	11			0.923564
427			88	11	0.923564
428	88			11	0.923564
432	88			11	0.923564
435		11	88		0.923564
436	88			11	0.923564
459	86	13			0.999973
518		75	25		1.0
519			90	10	0.999898
520		80	10	10	0.99967
521	80	5		15	1.0
522	70	10	10		0.999533
523		80		10	0.99967
524		10	80	10	0.99967
525	80			20	1.0
526		90	10		0.999898
527	10	80	10		0.99967
530		5	20	75	1.0
531			5	85	0.999793
533	85	5		10	0.999793
534	80	10	5	5	0.99967

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain