SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24028

Length: 970 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24028

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Iron-sulfur assembly protein IscA, chloroplastic n=3 Tax=Arabidopsis RepID=ISCAP_ARATH	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	iron-sulfur assembly protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	88%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	FeS cluster biogenesis	IPR000361	-	88%
Blast2go	FeS cluster insertion	IPR016092	-	88%
Blast2go	FeS cluster insertion, C-terminal, conserved site	IPR017870	-	88%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
210		12		87	0.992554
211	12			87	0.992554
213		87	12		0.992554
216		87	12		0.992554
222	87		12		0.992554
237		12		87	0.992554
253	12		87		0.992554
261	12	87			0.992554
262	12	87			0.992554
305	10		90		0.90298
306		90		10	0.90298
307	90		10		0.90298
308	90		10		0.90298
309	90		10		0.90298
321		10		90	0.90298
337	90		10		0.90298
478		12		87	0.992554
497		14	78	7	0.999974
499	85			14	0.999981
500		21	78		1.0
503			14	85	0.999981
504	14		85		0.999981
506		14		85	0.999981
507		85		14	0.999981
767		14		85	0.999981
883	31	68			1.0
884	25	6		68	1.0
936		15		84	0.999986

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain