SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24008

Length: 1766 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene24008

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell wall apoplastic invertase n=3 Tax=Vitis vinifera RepID=Q3L7K5_VITVI	-	-	59%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme 1; Daucus carota (Carrot).	-	-	54%
Blast2go	cell wall invertase	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 32	IPR001362	-	70%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	70%
Blast2go	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	70%
Blast2go	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	70%
Blast2go	Glycosyl hydrolase family 43, five-bladed beta-propellor domain	IPR023296	-	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P26792

Fln msg: your sequence is shorter than subject: 387 - 592

Fln protein: VGPWWIVVGNKRKHRGVALLYRSKDFVHWVKAKHPLHSSKFTGMWECPDFYPVPLSGNKGLDTSAIGHSLKHVLKVSLDDYKYEYYTVGTYLRDRDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQNKQRRILWGWINESDSVPDDKSKGWSGVQAIPRTIWLDHATRARLLQWPVSEVEALRRKKTSKQNLHLRSGSVVEIAGVNAAQVDVEVSFDLPRAEIADFKDEVGVNLTAQQLCSQLGSAARTVVGPFGLLVLASKGLNERTAVFFQIVRYRKQLKLLMCSDQSRSSLQSDVDKTTYGTFVKRLGYFKEKSVSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTATKLTAWEMASSNGSTLR*

Protein Length: 388

Fln nts: CGTCGGACCTTGGTGGATTGTGGTTGGAAATAAGAGGAAACACAGAGGGGTGGCTTTGTTATACAGAAGCAAGGACTTCGTCCACTGGGTGAAGGCCAAGCATCCTCTGCATTCGTCGAAATTCACCGGAATGTGGGAATGCCCCGACTTTTACCCTGTTCCTCTTTCTGGGAACAAAGGATTAGACACGTCCGCTATTGGGCACTCGCTTAAACATGTTCTGAAGGTGAGTCTGGACGATTACAAGTACGAGTATTATACAGTGGGAACTTACTTGCGGGACAGGGATCGATACGTGCCAGACAATACCAGCAGCGACGATGAAAATGGGTTGAGATATGACTATGGCAAATTCTATGCTTCCAAGACATTTTTTGATCAAAATAAGCAGAGGCGAATTTTGTGGGGATGGATCAACGAATCGGATAGCGTGCCTGACGATAAAAGCAAGGGCTGGTCTGGTGTTCAGGCGATTCCAAGAACAATCTGGCTAGACCACGCCACGAGAGCGCGGCTTTTACAATGGCCAGTTTCCGAAGTAGAAGCTCTTCGTCGAAAGAAAACATCGAAACAGAATCTACATCTCCGCAGTGGGTCCGTTGTAGAAATTGCAGGCGTTAACGCTGCGCAGGTCGATGTGGAAGTCTCCTTCGATCTCCCGAGGGCTGAAATCGCAGACTTTAAAGATGAGGTGGGAGTAAATTTGACAGCTCAACAGCTGTGCAGCCAGTTGGGGTCAGCTGCGAGGACTGTTGTTGGGCCATTTGGGTTGCTTGTTTTAGCTTCCAAGGGCTTGAATGAACGCACTGCTGTGTTTTTTCAGATCGTTCGCTATCGAAAACAATTGAAGTTATTAATGTGCAGTGATCAGAGCAGATCGTCTTTGCAGAGCGACGTTGACAAGACAACATATGGAACTTTCGTGAAACGTTTGGGTTATTTCAAGGAGAAGAGTGTTTCATTGCGAGTCCTGGTTGATCATTCCATCGTTGAGAGCTTTGGAGAAGGGGGAAAAGCGTGCATAACGGCTAGAGCTTATCCCACCCTGGCAATTGGCAAAGACGCCCATCTCTACGCCTTCAATAACGGCACTTCCACTGTCACTGCCACCAAATTAACCGCATGGGAAATGGCTTCATCCAATGGCAGTACTCTGCGCTAA___ATAAATGAGTTTTAAAATGTGCATTACAGCGATAAAAACTTCTCAATTTGTCAAAAAAAACGGCAGAGATTTTCGTCGTGACCCCCAAACATAAGTTGCTGAGGAGTTTTGAACGGTTATTTTTATCAGTTGCTCAGTTTTCCATGCGGAAAACAAGTTCAGTTCCATAAAGACGCGTAGAATCTGCATTCGACCTGAGGTGATCAGTTCATCGTTCAATGTGTGTGGATTTAGCTGTAGATTTTTTGGGTAGTCTGTTTGGAAGAATAGTGGAATTAAGAATAATTATTCTACGTACAAGGAGTGTTTATATGTACTCCGAGACCTTTCTCCCCCTTCAATAATGTTGTGGATTTTGCGGCTAGCCCATTGGCCGAGTTGCACCATCCACCTTGCCGAGTTGCCGAGGTGTCATTAATATTATAGCCAGTGGAAAAGTTCGTTAGTTGGATAAGATAAAACTGTTGTGTCATCACCGATTCATCACAGAATACATATAATGGATATGTACGGTATTCCGTCTTTTCATTCCATAAAGGTTGTTACTTTCATAAAACCTGGAGTATGCTCAAATATGTATTGATTTATTAAAATACATTTGGCC

Fln Alignment:

sp_v1.1_unigene24008___GPWWIVVGNKRKHRGVALLYRSKDFVHWVKAKHPLHSSKFTGMWECPDFYPVPLSGNKGLDTSAIGHSLKHVLKVSLDDYKYEYYTVGTYLRDRDRYVPDNTSSDDENGLRYDYGKFYASKTFFDQNKQRRILWGWINESDSVPDDKSKGWSGVQAIPRTIWLDHATRARLLQWPVSEVEALRRKKTS-KQNLHLRSGSVVEIAGVNAAQVDVEVSFDLPRAEIADFKDEVGVNLTAQQLCSQLGSAARTVVGPFGLLVLASKGLNERTAVFFQIVRYRKQLKLLMCSDQSRSSLQSDVDKTTYGTFVKRLGYFKEKSVSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTATKLTAWEM
P26792_______________GHWKMLVGSKRNRRGIAYLYRSKDFIKWTKAKHPIHSQANTGMWECPDFFPVSLKGLNGLDTSVTGESVKHVLKVSLDLTRYEYYTVGTYLTDKDRYIPDNTSVDGWAGLRYDYGNFYASKTFFDPSKNRRILWGWANESDSTAHDVAKGWAGIQLIPRTLWLDPSGK-QLMQWPIEELETLRGSKVKFSRKQDLSKGILVEVKGITAAQADVEVTFSFKSLAKREPFDPKWLEYDAEKICSLKGSTVQGGVGPFGLLTLASEKLEEYTPVFFRVFKAQNTHKVLMCSDATRSSLKEGLYRPSFAGFVD-VDLATDKKISLRSLIDNSVVESFGAKGKTCISSRVYPTLAVYENAHLYVFNNGSETITVENLDAWSM

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
107		50		50	1.0
118	50		50		1.0
125	80		20		0.995493
126		80		20	0.995493
131	80	20			0.995493
132		20		80	0.995493
133			80	20	0.995493
137		20	80		0.995493
138	80			20	0.995493
139	80		20		0.995493
141		20	80		0.995493
142	20	80			0.995493
144		80		20	0.995493
145		40	20	40	1.0
146	20		80		0.995493
148		40		40	1.0
208	40		60		1.0
221		60		40	1.0
270		66		33	1.0
271		33		66	1.0
535		66	33		0.997452
658		66	33		0.997452
663		33	66		0.997452
1084		25		75	0.996473
1085	75		25		0.996473
1086	75			25	0.996473
1089			75	25	0.996473
1090		75	25		0.996473
1093		25		75	0.996473
1095		75		25	0.996473
1096		75	25		0.996473
1097	75		25		0.996473
1195	20			80	0.995493
1196	80			20	0.995493
1208	80			20	0.995493
1211			20	80	0.995493
1223	60	20	20		0.99255
1224		87	12		0.992554
1232	50		50		1.0
1236		12		87	0.992554
1256	50			50	1.0
1319	50		16		1.0
1331		16		83	0.994512
1351	85		14		0.993533
1353			14	85	0.993533
1354		85		14	0.993533
1359		12		87	0.992554
1361	75	12		12	0.975346
1362		12	75	12	0.975346
1365		12	87		0.992554
1368		87		12	0.992554
1369	87		12		0.992554
1371		12		87	0.992554
1374	87		12		0.992554
1377	12		87		0.992554
1378		12		87	0.992554
1386	12		87		0.992554
1465			25	75	0.996473
1574		39		60	1.0
1658	42	57			1.0
1675		61		38	1.0
1698			20	80	0.995493
1716	25			75	0.996473
1726	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain