SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene24001

Length: 2228 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene24001
CGTCGTGACCTACGCCAGCACTAACGTCCTGACCGCATTTTTCCGTCGTGATTCCCTCCACAGCTCCGCTTGCTTGCCTCTGAACGTTGTAACCCTCGAGCCTCAGCGCTGTTCTGCTTGTTTGTTAATTCGGGATATGGCCAGATCCTTATGAAAGAAAACAGCGGGCAGATTACAGATCAATGCTTCTGCTACTACCGCTTCAGCGCCACTCCAAAAAATTCATGCAATTCTCCGTGCTCGGAAGTTTTGTGTATTTTGTGTGCACCCAGTGGTTCTCAACTCGGCTATAGCTCAAAACAGTATCTATTCACCACTCGTAGACAAGCGGCTCCGCTCCTTTCCTTATCAGTCGAGCGGCTTCGCACCTTTTGAAATCTGAAACTCTTCTTGCTATGGGGTCTATTTAACCTGACCTGCAGAAGTTGCCATTGCATCTGGACTATCTCTCGTATTAATTCTTCCCCTCATCTCACCTTCTTATTAGCCTTCTTTAGAGAGGTGGTTACACGTTTACTAAATTAGAATTCACAGCTTCCAAAGGATCGAACTCACCCCCTACCAGCACACGAACCCCATTCCACCTCAAACTACAGTGCTTAAACCCTAAATCGTAGACGCGACAGTGGCAGGAGCATGCACAGATTCAAGGGTTCAAGGTTTTATCAGTAATGCATGGAAAAATTTACCATTGAGCAAAACGACAGCTAACGAAAAGTAATCTGGAAAACAAATTTGGAAACGCACAAGAAGAAATTAGTAAAAATGATACGCAGGAACGCTCGGTTGAGACGCGAATATATGTACCGCAAAAGCTTGGAGGGAAAGGAACGCTTGCTTTATGAGAAGAAACGTAAAATTAGACAAGCATTGGAAGAAGGGAAACCCATACCTACTGAACTCAGGAACGAGGAAGCAGATTTGCGCGAGGAAATTGACCTGGAAGACGATCAAACAACAGTATTAAAAACCCACATTGATGATGAATATGCAAATGCGGCCGAAAATGATCCAAAAATTCTGTTAACTACTTCCCGTAGTCCAAGCAGCCGGCTAACACAGTTTGTAAAGGAACTGAAGTTTGTATTTCCTAATGCACAAAGGATCAACCGTGGTGGTCAAGTTATATCTGAAATTGTTGAGGCGTGTCGTTCCCACGAGTTTACGGATATTGTGGTGGTACATGAGCATCGTGGGGAGCCTGATGGGTTAATTGTGTGCCATTTACCCTTTGGCCCCACTGCCTACTTTGGGTTATACAATGTGGTGACGAGGCATGATATAAAGGATAAAAAGGTTGTGGGAACCATGTCAGAGGCTTATCCACATCTTATTCTTCATAATTTCTCCACCAAGCTTGGTGAAAGAACTGCAAACATACTGAAGTATCTGTTTCCAGTTCCCAAAACTGATACAAAGCGTATCATAACATTTGCAAATCAGTCAGACTACATCTCTTTCAGGCATCATGTTTATGAAAAACCTGGAGGACCCAAATCAATTGAACTTAAGGAAGTTGGTCCACGTTTTGAATTGAGACTCTATCAGATAAAACTGGGAACGCTTGATCAAAAAGAAGCTCAAAGTGAATGGGTGATTAGGCCATACATGAACACTGCTAAAAAGCAGAAGATTCTTGGAGATTAAGGCATATCTGTGCACTTCTATAATTGAAAATCCTTTCATCTATCAATCTACATCTTGCCAGAATTGTTTAGCAGGAAATTTTGAGCAAGCTGTGTTTTTCCCTATTTGGTTATTTGTTCCTCCTGTAATTTCTCAGAACTGTGTTTTTGGAAGCTGGGTTATTTTAATTTTGGTCAAATGAACTTATGATTTAAGTGCAAATATAGCGCATCTTTTATTTTCGGATATTGAGTGGTAATAAACATTGATGTGGCAAGGAGGTATTATCAATGTTGTATTACTGTATCTACGAAGGCAATTATAATGTAACTGTGCAAGGAAAGCAAGTCAATTACATTGTGAAACAAGTAGTGGTACAACTTAGCGAATGAGTGCATAGGTTATCATATACAGTGGCTCAAAGACGCTGGGTTCAGAATTTTGCTAACCTGTCAAATGTCGGTGATTCACAGGATAAATGTTAAATTGTATTCGATGTTTCTCACGTCTTTTACAATGTATGCAACTTGCGCAGCTACTAGCTTATCTGATGTTCAATTTCTGTGTATAAGAATCAGCTTCTTAGAAACTCTTGAAAAATT

Ace file of the UniGene sp_v1.1_unigene24001

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U3 small nucleolar ribonucleoprotein protein imp4, putative	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	85%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	nuclear matrix	GO:0016363	Cellular Component	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5B6W8

Fln msg:

Fln protein: MIRRNARLRREYMYRKSLEGKERLLYEKKRKIRQALEEGKPIPTELRNEEADLREEIDLEDDQTTVLKTHIDDEYANAAENDPKILLTTSRSPSSRLTQFVKELKFVFPNAQRINRGGQVISEIVEACRSHEFTDIVVVHEHRGEPDGLIVCHLPFGPTAYFGLYNVVTRHDIKDKKVVGTMSEAYPHLILHNFSTKLGERTANILKYLFPVPKTDTKRIITFANQSDYISFRHHVYEKPGGPKSIELKEVGPRFELRLYQIKLGTLDQKEAQSEWVIRPYMNTAKKQKILGD*

Protein Length: 295

Fln nts: CGTCGTGACCTACGCCAGCACTAACGTCCTGACCGCATTTTTCCGTCGTGATTCCCTCCACAGCTCCGCTTGCTTGCCTCTGAACGTTGTAACCCTCGAGCCTCAGCGCTGTTCTGCTTGTTTGTTAATTCGGGATATGGCCAGATCCTTATGAAAGAAAACAGCGGGCAGATTACAGATCAATGCTTCTGCTACTACCGCTTCAGCGCCACTCCAAAAAATTCATGCAATTCTCCGTGCTCGGAAGTTTTGTGTATTTTGTGTGCACCCAGTGGTTCTCAACTCGGCTATAGCTCAAAACAGTATCTATTCACCACTCGTAGACAAGCGGCTCCGCTCCTTTCCTTATCAGTCGAGCGGCTTCGCACCTTTTGAAATCTGAAACTCTTCTTGCTATGGGGTCTATTTAACCTGACCTGCAGAAGTTGCCATTGCATCTGGACTATCTCTCGTATTAATTCTTCCCCTCATCTCACCTTCTTATTAGCCTTCTTTAGAGAGGTGGTTACACGTTTACTAAATTAGAATTCACAGCTTCCAAAGGATCGAACTCACCCCCTACCAGCACACGAACCCCATTCCACCTCAAACTACAGTGCTTAAACCCTAAATCGTAGACGCGACAGTGGCAGGAGCATGCACAGATTCAAGGGTTCAAGGTTTTATCAGTAATGCATGGAAAAATTTACCATTGAGCAAAACGACAGCTAACGAAAAGTAATCTGGAAAACAAATTTGGAAACGCACAAGAAGAAATTAGTAAAA_-_ATGATACGCAGGAACGCTCGGTTGAGACGCGAATATATGTACCGCAAAAGCTTGGAGGGAAAGGAACGCTTGCTTTATGAGAAGAAACGTAAAATTAGACAAGCATTGGAAGAAGGGAAACCCATACCTACTGAACTCAGGAACGAGGAAGCAGATTTGCGCGAGGAAATTGACCTGGAAGACGATCAAACAACAGTATTAAAAACCCACATTGATGATGAATATGCAAATGCGGCCGAAAATGATCCAAAAATTCTGTTAACTACTTCCCGTAGTCCAAGCAGCCGGCTAACACAGTTTGTAAAGGAACTGAAGTTTGTATTTCCTAATGCACAAAGGATCAACCGTGGTGGTCAAGTTATATCTGAAATTGTTGAGGCGTGTCGTTCCCACGAGTTTACGGATATTGTGGTGGTACATGAGCATCGTGGGGAGCCTGATGGGTTAATTGTGTGCCATTTACCCTTTGGCCCCACTGCCTACTTTGGGTTATACAATGTGGTGACGAGGCATGATATAAAGGATAAAAAGGTTGTGGGAACCATGTCAGAGGCTTATCCACATCTTATTCTTCATAATTTCTCCACCAAGCTTGGTGAAAGAACTGCAAACATACTGAAGTATCTGTTTCCAGTTCCCAAAACTGATACAAAGCGTATCATAACATTTGCAAATCAGTCAGACTACATCTCTTTCAGGCATCATGTTTATGAAAAACCTGGAGGACCCAAATCAATTGAACTTAAGGAAGTTGGTCCACGTTTTGAATTGAGACTCTATCAGATAAAACTGGGAACGCTTGATCAAAAAGAAGCTCAAAGTGAATGGGTGATTAGGCCATACATGAACACTGCTAAAAAGCAGAAGATTCTTGGAGATTAA___GGCATATCTGTGCACTTCTATAATTGAAAATCCTTTCATCTATCAATCTACATCTTGCCAGAATTGTTTAGCAGGAAATTTTGAGCAAGCTGTGTTTTTCCCTATTTGGTTATTTGTTCCTCCTGTAATTTCTCAGAACTGTGTTTTTGGAAGCTGGGTTATTTTAATTTTGGTCAAATGAACTTATGATTTAAGTGCAAATATAGCGCATCTTTTATTTTCGGATATTGAGTGGTAATAAACATTGATGTGGCAAGGAGGTATTATCAATGTTGTATTACTGTATCTACGAAGGCAATTATAATGTAACTGTGCAAGGAAAGCAAGTCAATTACATTGTGAAACAAGTAGTGGTACAACTTAGCGAATGAGTGCATAGGTTATCATATACAGTGGCTCAAAGACGCTGGGTTCAGAATTTTGCTAACCTGTCAAATGTCGGTGATTCACAGGATAAATGTTAAATTGTATTCGATGTTTCTCACGTCTTTTACAATGTATGCAACTTGCGCAGCTACTAGCTTATCTGATGTTCAATTTCTGTGTATAAGAATCAGCTTCTTAGAAACTCTTGAAAAATT

Fln Alignment:

sp_v1.1_unigene24001___MIRRNARLRREYMYRKSLEGKERLLYEKKRKIRQALEEGKPIPTELRNEEADLREEIDLEDDQTTVLKTHIDDEYANAAENDPKIXXXXXXXXXXXXXQFVKELKFVFPNAQRINRGGQVISEIVEACRSHEFTDIVVVHEHRGEPDGLIVCHLPFGPTAYFGLYNVVTRHDIKDKKVVGTMSEAYPHLILHNFSTKLGERTANILKYLFPVPKTDTKRIITFANQSDYISFRHHVYEKPGGPKSIELKEVGPRFELRLYQIKLGTLDQKEAQSEWVIRPYMNTAKKQKILGD
A5B6W8_______________MLRRNIRLRREYIYRKSLEGKERLLYEKKRKIKEALEEGKPIPTELRNEEAALRQEIDLEDEQTAVPRSHIDDEYANATEKDPKILLTTSRNPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHDFTDVVLVHEHRGVPDGIIISHLPFGPTAYFGLLNVVTRHDIKDKKAIGKMSEAYPHLILNNFSTKLGERTANILKHLFPVPKPDTKRIITFANQSDYVSFRHHVYEKRGGPKSIELKEVGPRFELRLYQIKLGTMDQSEAQIEWVIRPYMNTTKKRKFLGD

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
742			75	25	0.996473
743		75		25	0.996473
745		75	25		0.996473
746	75		25		0.996473
841		11		88	0.923564
922			11	88	0.923564
923			11	88	0.923564
946	11		88		0.923564
1231	14			85	0.993533
1253	12		87		0.992554
1298	14			85	0.993533
1433		12		87	0.992554
1522		88		11	0.923564
1616		87		12	0.999964
1623	86	13			0.999973
1792		7		92	0.999532
1984	75			25	1.0
2096	31	68			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain