SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23984

Length: 1078 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23984

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	enoyl-CoA hydratase/isomerase family protein; K05605 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	3-hydroxyisobutyryl-CoA hydrolase.	EC:3.1.2.4	-	0.0	57%

Source	KEGGs	Term	Identity
AutoFact	Valine, leucine and isoleucine degradation	00280	57%
AutoFact	beta-Alanine metabolism	00410	57%
AutoFact	Propanoate metabolism	00640	57%
AutoFact	Metabolic pathways	01100	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVZ0

Fln msg: your sequence is shorter than subject: 278 - 388

Fln protein: RRDLGCHSEKTVFAAPVVGFGFHPESGLSYILSHLSGHLGEYLALTGSRLDGAEMIATGLGTHYIPSEKLEELERRLIDLNTGDKNLVRATIEEFTLQVQPGEKSILHNSSLIDKCFSNDTVEDIIESLVAASDMEGNEWVKSTIKRLKRSSPTALKMTLRSVRQARKQTLFECLKKEFRLTVNTFRGVISNDIYEGIRALIIEKDNFPKWNPPLGEVTEEKLNLLFKPLEEDFELQLPIEGKISRWEGKYENSGYNTMYPHDCEVHKVMAHLKSRM*

Protein Length: 279

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGAAAACTGTCTTCGCAGCACCTGTAGTTGGCTTTGGATTTCACCCTGAATCGGGTCTCTCATACATTCTTTCACATCTTTCAGGACACCTTGGGGAGTATTTAGCCTTAACAGGCTCACGGCTTGATGGTGCAGAAATGATTGCAACTGGTCTTGGAACTCATTATATTCCATCAGAGAAATTGGAAGAATTGGAGAGGCGTTTAATTGATTTGAACACTGGAGATAAGAACCTTGTCAGAGCAACAATTGAAGAATTTACTCTTCAAGTTCAGCCGGGCGAGAAAAGCATTCTCCATAATAGTTCTCTGATTGACAAGTGCTTCTCCAATGACACTGTAGAAGACATCATAGAATCTCTGGTAGCAGCGAGCGATATGGAGGGGAATGAATGGGTCAAGAGCACTATTAAAAGATTAAAGAGGTCTTCACCAACTGCTTTGAAGATGACATTACGATCGGTTCGACAAGCACGCAAACAAACATTATTTGAATGTCTCAAAAAAGAGTTTCGTTTGACAGTAAACACATTCAGAGGAGTAATATCCAATGATATCTACGAGGGTATCCGAGCTCTCATTATCGAAAAGGATAATTTTCCCAAGTGGAATCCTCCCTTGGGTGAAGTCACTGAGGAAAAGCTAAACTTGCTCTTTAAGCCACTGGAGGAAGATTTTGAATTACAACTACCCATCGAGGGGAAAATATCAAGGTGGGAAGGAAAATATGAGAATTCAGGCTACAACACCATGTACCCACATGATTGTGAAGTTCACAAAGTAATGGCTCATCTTAAGTCTCGAATGTAA___AACACTTATTATTCCGAAGTTAGCTTAGCGATAGAAGCAAGGAACTTCATAAATGTAGTCAAGAAGTGTAATCATTAGTTTTTCGAACAATATTTCATTCCAATGAGAGATAATAAATCATATTCATAACAAAGTGCATTGTACTTTTGAACCTAGTTTTCATTATGGTTTAGGGTTCACTCGATGGCAACATTTCTTTGAAAGTACTAATATAATTTGAATGAGAAGAATTTCTACCCTGCAC

Fln Alignment:

sp_v1.1_unigene23984___SEKTVFAAPVVGFGFHPESGLSYILSHLSGHLGEYLALTGSRLDGAEMIATGLGTHYIPSEKLEELERRLIDLNTGDKNLVRATIEEFTLQVQPGEKSILHNSSLIDKCFSNDTVEDIIESLVAASDMEGNEWVKSTIKRLKRSSPTALKMTLRSVRQARKQTLFECLKKEFRLTVNTFRGVISNDIYEGIRALIIEKDNFPKWNPPLGEVTEEKLNLLFKPLEEDFELQLPIEGKISRWEGKYENSGYN
A9NVZ0_______________TEKTVLSAPEAGFGFHTDASLSYILSHLPGHLGEYLALTGARLDGAEMIATGLGTHYIPSEKLEDLEKRLVDLNSGDRNIVRAAMEEFSLQVQPGEKSILYNRSLIAKCFSKDTVEEIIETLIAENNMEGNEWVKDTIQNLKRSSPTGLKMTLRSVRQARKQTLSECLKKEFRLTINTLRGVISNDIYEGMRALVIDKDNSPKWNPPLSEVTEEKLDLVFSSFEEEFELQLPQEEKISRWEGKFECSGFH

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
48		25		75	0.996473
50	50			50	1.0
51	50	25	25		0.995533
53		25		50	0.995533
56	25		50	25	0.995533
59		50		50	1.0
61		25		75	0.996473
62	25		75		0.996473
64	75	25			0.996473
66			25	75	0.996473
71		75		25	0.996473
74	25		75		0.996473
148	57		42		1.0
159		42		57	1.0
190		57		42	1.0
201		85		14	0.993533
218		57		42	1.0
225	57		42		1.0
247		50		50	1.0
267	60		40		1.0
290		50	50		1.0
301	50		50		1.0
303		50		50	1.0
304			50	50	1.0
335		50		50	1.0
341	50		50		1.0
344	50	50			1.0
379	60		40		1.0
390		40		60	1.0
392	50		50		1.0
394	50		50		1.0
397			50	50	1.0
801	85		14		0.993533
802		85		14	0.993533
871	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain