SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23977

Length: 836 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene23977 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ 11, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9R8A2_RICCO	-	-	5.0e-19	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	59%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	59%
Blast2go	Heat shock protein DnaJ	IPR003095	-	0.0	59%

Full-Lengther Next Prediction

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
129			33	66	0.997452
133	33		66		0.997452
149		25	75		0.996473
155		75	25		0.996473
167		75		25	0.996473
169	75	25			0.996473
184			25	75	0.996473
186	75		25		0.996473
190		25		75	0.996473
224		75		25	0.996473
227	25	75			0.996473
228	25	75			0.996473
245		25		75	0.996473
253	25	75			0.996473
260		25		75	0.996473
270		75	25		0.996473
290	25		75		0.996473
299	25		75		0.996473
307			25	75	0.996473
308	25			75	0.996473
309			25	75	0.996473
312	25		75		0.996473
314	25	75			0.996473
315		75	25		0.996473
316	75	25			0.996473
317	75	25			0.996473
321		60	20	20	0.99255
323		20	80		0.995493
324	20			80	0.995493
328	20			80	0.995493
330	80		20		0.995493
347	50			50	1.0
363		75	25		0.996473
455	57		42		1.0
495		57	42		1.0
525		71	28		1.0
606	27	72			1.0
625	10	90			0.90298
627	90		10		0.90298
629		10		90	0.90298
630	10		90		0.90298
632		10		90	0.90298
634	10			90	0.90298
635	10			90	0.90298
636		90	10		0.90298
641	10	90			0.90298
645	90		10		0.90298
653	42			57	1.0
654		42	57		1.0
657	42		57		1.0
663	42	57			1.0
665			42	57	1.0
666	57		42		1.0
668		42	57		1.0
671		57	42		1.0
699	75		25		0.996473
706		66	33		0.997452
715	33		66		0.997452
723	33			66	0.997452
738	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain