SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23975

Length: 1084 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23975

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline-rich cell wall protein-like n=3 Tax=Arabidopsis RepID=Q8LG11_ARATH	-	-	9.99995e-41	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	proline-rich cell wall	-	-	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UBA-like	IPR009060	-	0.0	71%
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQQ1

Fln msg:

Fln protein: MDFDYRKGGGSSRGHMGGTTTAPYDASRPMYRQPYERSGVSPYGPGPGPSSYYPTVGQPVGPPVNRPPPPVPVSSSSSSGTGIRVAIKPEYRITPPPQLSPQIGEIRRSTFQFDFDFERKILAEAEKENQNWNRVASENVSRPKSGETSSLGSVDDQVINKYVAMGFNKEAVSIAVASFGDNQNKVREFITSYNLLREMGFPSHTVAGVLAMYDNDRDKALAHLLSNMS*

Protein Length: 231

Fln nts: ATGGGGCTTTTGTGTTTCCGTATAAAATAAAACAAGAAAAATAAGCCAGGTTGCCTTCGTTCCGACTCCAAGTACCTGCACGAGGCCTCTTTAAACTGGTTATTCAGCGCGGAAACTCGCTGTGAAAAAAAATCTTCCCCTGGATAATTGAGGTTTCTTCTAGCTTTAGCATATTAGAACGAGGTTAGGCTTCCGTTGGCCTGGTTTCTGATCAGTGGAGACGCATAATTTTATTCAATTTTGAGATACTCCGTCACCTCAATTCATCAAACAGCGAACTGGTAGCG_-_ATGGATTTCGACTACAGGAAAGGAGGCGGGTCTTCTAGAGGTCACATGGGAGGCACTACTACCGCTCCATATGATGCGTCCAGGCCGATGTACAGACAGCCTTATGAGCGATCCGGAGTCTCTCCATATGGCCCTGGCCCTGGTCCTTCTTCTTATTATCCAACGGTTGGGCAGCCCGTCGGTCCCCCTGTGAACAGGCCTCCGCCTCCCGTCCCAGTTTCTTCATCGTCTTCATCAGGAACGGGCATCAGAGTTGCAATAAAACCGGAATACCGAATCACACCTCCGCCACAATTATCCCCTCAAATTGGAGAAATTCGTCGAAGCACTTTTCAATTTGACTTCGATTTTGAGCGGAAGATACTAGCAGAGGCTGAAAAGGAGAATCAAAACTGGAACAGAGTTGCATCTGAAAATGTTTCTCGACCAAAAAGTGGAGAAACAAGTTCCTTGGGATCTGTTGATGATCAAGTCATTAACAAGTATGTGGCAATGGGATTCAATAAGGAGGCTGTATCCATTGCCGTGGCAAGTTTCGGTGATAATCAAAATAAGGTTCGTGAATTCATTACTTCATACAATTTATTACGGGAGATGGGCTTCCCTTCTCACACAGTTGCTGGGGTCTTAGCTATGTATGATAATGACAGAGATAAAGCATTAGCACATCTTCTAAGCAACATGTCGTAA___GACTCGTAGAAGAGTAAGTTTCGACATTTACAATTTATAAATGTTAAAAGCTCATTGTTGGGATGTGCTTTCCCATGTGGTTTAGAATGATGATACACACAGATATT

Fln Alignment:

sp_v1.1_unigene23975___MDFDYRKXXXXXXXXXXXXXXAPYDASRPMYRQPYERSGVXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXXXXXTGIRVAIKPEYRITPPPQLSPQIGEIRRSTFQFDFDFERKILAEAEKENQNWNRVASENVSRPKSGETSS---LGSVDDQVINKYVAMGFNKEAVSIAVASFGDNQNKVREFITSYNLLREMGFPSHTVAGVLAMYDNDRDKALAHLLSNMS
A9NQQ1_______________MDFDYRKGGGSSRGHMGGTA-TPYDGSRPMYRQPYDRAGVSPYGPGPGPSSYYPTVGQPVGPPVNRPPPPVPVSSSSSSGTGIRVAIKPEYRITPPPQLSPQIGEIRRSTFQFDFDFERKILAEAEKDNQNWSRIASENASRPKSGETSSTSSLGSVDDQVINKYVATGFNREAVSIAVATFGDNQNKVREFVTSYNQLREMGFPSHTVSGVLAMYDNDRDKALAHLLSNMS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
38	66	33			0.997452
39	66		33		0.997452
40	66			33	0.997452
41	66	33			0.997452
42	66		33		0.997452
44	66		33		0.997452
46		33	66		0.997452
48		66		33	0.997452
49	66			33	0.997452
52		33		66	0.997452
58		33		66	0.997452
59	33	66			0.997452
201		50		50	1.0
336		61	38		1.0
837	95	5			0.997749
839	95	5			0.997749
843	2	12	86		1.0
844		8	90	2	1.0
847		92	8		1.0
851	91			8	1.0
852	89	10			1.0
853		8		91	1.0
901	95			4	0.994598

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain