SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23972

Length: 1304 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23972

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	plastid protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADA0

Fln msg:

Fln protein: MILGRALLLRPTLGISSNRGVALFTTRATFQGAFNGRVSTMGFRGGRFLGAVSTFRPKVLVLNNTRCFAANPTASSMTDPSPNWSNRPPKETILLDGCDYEHWLIVMEPPQGNPTRDEIIDSYIKILAQIVGSEEEARMKIYSVSTKHYYAFGCLISEELSYKLKPMENVRWVLPDSYLDPRTKSYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNFERRREMQQQARQNYQRPPPPTSSPPADGNARPAQAPYTQG*

Protein Length: 274

Fln nts: ATGGGGGGCTGATTCGCTTGTTTGTGGACGCTATTTACTACATTTCCTGCCTCTGAAACAAGCGAGAACCAAG_-_ATGATATTGGGAAGGGCTCTTCTGTTGAGGCCAACGCTGGGCATCTCTTCTAACAGAGGAGTCGCACTCTTTACAACAAGGGCCACATTTCAGGGTGCCTTCAATGGCAGAGTCTCGACCATGGGGTTTCGCGGTGGGAGGTTTCTGGGAGCTGTTTCCACCTTCCGACCTAAGGTCCTAGTCCTGAACAATACGAGGTGTTTTGCGGCTAATCCTACCGCTTCGTCGATGACGGATCCTTCGCCCAACTGGAGCAATCGTCCCCCTAAGGAGACTATTCTGCTGGATGGTTGCGATTACGAGCACTGGCTCATTGTCATGGAGCCCCCACAGGGCAATCCTACCAGAGATGAAATCATTGATAGCTATATTAAGATCCTTGCCCAGATTGTCGGAAGTGAGGAGGAAGCCAGGATGAAGATTTATTCAGTCTCTACAAAGCACTACTATGCATTTGGCTGCCTGATATCGGAAGAGTTGTCTTATAAGCTCAAGCCCATGGAGAATGTCCGCTGGGTGCTTCCTGATTCCTACTTGGACCCTCGAACTAAATCATATGGAGGCGAACCTTTCATTAATGGACAGGCGGTTCCCTATGATCCCAAGTACCATGAAGACTGGGTAAGGAACAATGCACGGTGCAATGAAAGACGCTCCAATGATAGACCACGGAACTTTGACCGATCAAGAAATTTTGAAAGGCGCAGAGAAATGCAGCAGCAAGCAAGGCAGAATTACCAGCGTCCTCCACCCCCTACTTCCTCTCCACCAGCAGATGGCAATGCACGGCCTGCTCAGGCACCATATACTCAGGGTTAA___GTGAATAATTTTAATCTCACCATTGTTGAAACACAATTTGATCTCAAGAAGCAGACTTATTTGATTTGTGGTCTCGCTGGCAATGCAGGTCGGTGAAAATGTGGAACTTTTTGCAAGCCAATAGCGCTAGGTATTTGGACGATTTTTCAGTGCGACAAATTGGCTTAAACTCTTGCTTTTAGCTCATATAATGCTATATATATTAGGGTTGGGTTGGCTAGGATATTCATAGAAGGCCTATGAAGGAAATATCAGAAATATGATAGGCGGGTGGGCAATGTGTGTTTGTAGAAGTCTTTAGTGGTTTTCTGTCCTTGCTTTAAGGTATGCTAAGCTACTACATGTAAGATATCTGGACAACGGATTTTGGTTTTATGAATTTTACATTGAGAAGATGAAAATTGGAAAGCAA

Fln Alignment:

sp_v1.1_unigene23972___MILGRALLLRPTLGISSNRGVALFTTRATFQGAFNGRVSTMGFRGGRFLGAVSTFRPKVLVLNNTRCFAANPTASSMTDPSPNWSNRPPKETILLDGCDYEHWLIVMEPPQGNPTRDEIIDSYIKILAQIVGSEEEARMKIYSVSTKHYYAFGCLISEELSYKLKPMENVRWVLPDSYLDPRTKSYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNFXXXXXXXXXXXXNYQR------XXXXXXXXXADGNARPAQAPYTQG
D5ADA0_______________MILGRALLLRPSLGISSNRGAAFLTTRAALQSAFNGRVSTAGFRGGKFLGAVSIARPPALVLQKTRSFAANPTTSSMTDPSPNWSNRPPKETILLDGCDYEHWLIVLEPPEGSPTRDEIIDSYIKTLSQVVGSEEEARMKIYSVSTKHYFAFGCLISEELSYKLKPMKNVRWVLPDSYLDPRTKSYGGEPFINGQAVPYDPKYHEDWVRNNARCNERRSNDRPRNFDRSRNFERRREMQQQARQNYQRPPPPPSSAPPPSSTPADGNAQPIQAPFTQG

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
60		33		66	1.0
61	33		66		1.0
62	33		66		1.0
63			33	66	1.0
64		33	66		1.0
118	66		33		0.997452
166		66	33		0.997452
662		88	11		0.923564
788		28		71	1.0
790		71		28	1.0
791	71	28			1.0
793		71		28	1.0
796		28	71		1.0
798	66			33	1.0
799	66			33	1.0
801		66	33		1.0
802	66	33			1.0
803	66			33	1.0
805			66	33	1.0
808		33	66		1.0
809	66			33	1.0
860		25		75	1.0
863	75		25		1.0
864		75		25	1.0
866	25		75		1.0
870			75	25	1.0
871		75	25		1.0
872			25	75	1.0
874	75			25	1.0
876			75	25	1.0
881	88		11		0.923564
883	88		11		0.923564
889	88			11	0.923564
890			88	11	0.923564
893		11		88	0.923564
899		11	88		0.923564
901	88	11			0.923564
963		12		87	0.999964
1135	81			18	0.999994
1136			18	81	0.999994
1142	20			80	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain