SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23931

Length: 1654 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23931

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box domain containing protein n=2 Tax=Zea mays RepID=B6TRX2_MAIZE	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	f-box family protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Herpesvirus UL92	IPR004289	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA40

Fln msg: Overlapping hits, possible frame ERROR between 403 and 349, your sequence is longer than subject: 386 - 336

Fln protein: MAGFEETSSAEFEEILSSDGEREEGPLSSYGDGSDNEDVLLAQFLESEVLAVDSDQEDMISRPSxxxxxxxxxxxxxxxxxxxxVWTAQKDGNQPLNTSGIITKWGPNFQSQTEICGSSGDPKVQPSIENGVFSKIPVELFPKILKFLSSEDLVTCALVCRFLNNASSDESLWRRLYCMRWGLSSPAKLEGKPRCSAWKRLYIERDEDDMTEWVRTAPSEFREYYIQMQASKRSQTPLPSQVNDDMLLLDTTVADRITHLKHSRGLPDEFTAEHVCSGRTCTYSQIGDAFLCEKTGRVHVCDDTCREIVLDTSSGLLVCTVSGRCFDRWLSPLEEELYLGDQQDDASNGVDEAEPFMGSGRFARAYLLGYNCDDEKELEAALAIC*

Protein Length: 387

Fln nts: ATGGGGAGCTTAAGTTCGTCTTCTCGGCACTGAAATCGCTGGGGGGGTTTCAAACTCTTCTTGAATTTGGGGGATTTGGGATGAAATTGGTTCGATTAGCAGAGAGTGAGTAGAATTAGGTTTGATTTAGGTTTTGGCAAGTAAGGGTTTCAGG_-_ATGGCCGGCTTTGAAGAAACTTCGAGCGCGGAGTTTGAAGAGATTTTGAGCTCAGACGGAGAGCGAGAAGAGGGTCCTCTTTCAAGTTACGGAGATGGCAGCGACAACGAGGACGTCTTGCTTGCTCAATTTCTCGAGTCCGAGGTACTTGCTGTAGATTCTGATCAGGAAGATATGATCTCAAGACCATCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTGGACTGCCCAAAAAGATGGGAATCAACCATTGAATACAAGTGGAATTATTACGAAATGGGGGCCAAATTTTCAAAGTCAAACAGAAATTTGTGGAAGTAGCGGAGATCCTAAAGTTCAACCTAGCATAGAAAATGGAGTTTTCAGCAAGATACCTGTGGAGCTATTTCCAAAAATTCTTAAATTTCTATCTTCAGAGGATCTTGTAACGTGTGCTTTAGTTTGCAGATTTTTGAATAATGCATCATCAGATGAATCTCTTTGGCGTCGGCTATATTGTATGCGCTGGGGTTTGTCTTCCCCAGCAAAATTGGAGGGAAAGCCCCGTTGTTCTGCATGGAAACGACTATATATTGAGCGGGATGAAGATGATATGACTGAATGGGTTCGAACTGCACCTTCTGAGTTTCGGGAGTATTACATTCAAATGCAGGCTTCCAAACGAAGTCAAACTCCTCTTCCTTCACAGGTGAATGATGATATGCTTCTTCTTGATACAACAGTTGCTGATCGAATAACCCATTTGAAGCATAGTCGAGGATTGCCTGATGAATTCACAGCAGAGCATGTATGCTCTGGAAGGACATGCACTTACTCACAAATTGGTGATGCCTTCCTATGTGAAAAGACAGGACGAGTGCATGTATGTGATGATACATGCCGAGAAATTGTTTTAGATACATCCAGTGGACTTCTAGTTTGTACAGTCTCTGGGCGATGTTTTGATAGATGGCTTTCACCATTAGAAGAGGAACTGTATCTGGGAGATCAACAAGATGATGCTAGCAATGGAGTAGATGAAGCAGAGCCCTTCATGGGGTCAGGTCGCTTTGCACGTGCGTATTTGCTGGGATATAACTGTGATGATGAGAAGGAACTTGAAGCCGCATTGGCTATTTGTTGA___TTGATTCCTCGCTTGGTTTTCGTTCGTCAGGAATCAAGTTGAAATTTTAAAGTTTGATAAGTTTGTTTTCTATCTAAATAGTATTCGGAGACTCATTATATCCTGACACCGATTGTATTTCATAAACAAGGCGAGGACTGCCCGGGAAATACATTATATCGTGATGTGTAAATTTCAATCGATATTTATGAGATTTTTGTTTTCAGTGGTAGCACGACCATATTAAAATCAACTATATGACTTTATTGTATCTGATAAGCCTTCAGTTTATTTTCCAATGTTTGGGGTTTTTGTAAGACATTTTTCTACAGTACAAATTCTATTTCTCATGGCATTTTGCAGG

Fln Alignment:

sp_v1.1_unigene23931___FEEILSSDGEREEGPLSSYGDGSDNEDVLLAQFLESEVLAVDSDQEDMISRPSxxxxxxxxxxxxxxxxxxxxVWTAQKDGNQPLNTSGIITKWGPNFQSQTEICGSSGDPKVQPSIENGVFSKIPVELFPKILKFLSSEDLVTCALVCRFLNNASSDESLWRRLYCMRWGLSSPAKLEGKPRCSAWKRLYIERDEDDMTEWVRTAPSEFREYYIQMQASKRSQTPLPSQVNDDMLLLDTTVADRITHLKHSRGLPDEFTAEHVCSGRTCTYSQIGDAFLCEKTGRVHVCDDTCREIVLDTSSGLLVCTVSGRCFDRWLSPLEEELYLGDQQDDASNGVDEA
D5AA40_______________FEEILSSDGEQEEGPLSSSGDGSDNEDVLLAQFLESE--------EDLVSRPSxxxxxxxxxxxxxxxxxxxxGLDCTKDGNQPFDTSEIVTK-RTDFQSQTEACGSSGDSKVQPCIENGVFSKIPAELFPKILKFLSSEDLVTCALVCRFLNYASSDESLWRRLYCMRWGLSSPTKLQGKPRSSAWKRLYIERDEDDMIEWVRTAPTEFREYYIQMQASKRSQTPLPSQVNDDMFLLDTTVADRITHLKHSRGLPDEFTAEHVCSGRTCTYSQVGDAFLCEKTGRVHVCDDTCREIVLDTSSGLLVCTVSGRCFDRWLSPSEEELYLGDQQSDANNPADEA

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
52	83		16		0.994512
53	83			16	0.994512
54	83	16			0.994512
55		83	16		0.994512
57		83	16		0.994512
58	16			83	0.994512
59		16		83	0.994512
64	83		16		0.994512
65	83	16			0.994512
68	16			83	0.994512
69		16	83		0.994512
70			83	16	0.994512
71		16	83		0.994512
72	16		83		0.994512
103	85	14			0.993533
105	85	14			0.993533
110		14	85		0.993533
112	85			14	0.993533
114	85		14		0.993533
115	85	14			0.993533
119			85	14	0.993533
120		14	85		0.993533
121	14			85	0.993533
229	18			81	0.999994
289		84		15	0.999986
455	50		50		1.0
458	83		16		0.994512
460		33	66		1.0
564		50		50	1.0
893		10		90	0.90298
1023		25		75	0.996473
1050		42		57	1.0
1051			85	14	0.993533
1052		14		85	0.993533
1053	71	28			1.0
1054		22		55	0.999999
1057		22	77		0.999999
1058	77		22		0.999999
1059		22		77	0.999999
1060		22	77		0.999999
1061	77			22	0.999999
1062		22		77	0.999999
1063	55		22		0.999999
1064		77	22		0.999999
1065	55	22		22	0.999999
1068			22	22	0.999999
1070		77		22	0.999999
1071			77	22	0.999999
1072	55	22		22	0.999999
1073	12	25	50		1.0
1075	75	25			1.0
1076	75			25	1.0
1077		25		75	1.0
1078	20	10		70	0.999998
1081		10		90	0.90298
1082			10	90	0.90298
1087		10		90	0.90298
1090	90			10	0.90298
1092		88	11		0.923564
1094	88			11	0.923564
1097		11	88		0.923564
1174	80	20			0.999996
1179	80		20		0.999996
1180	80			20	0.999996
1181		80	20		0.999996
1183	80	20			0.999996
1184		20	80		0.999996
1185	80			20	0.999996
1188	80		20		0.999996
1191		80		20	0.999996
1192		20		80	0.999996
1194		20	80		0.999996
1223	83		16		0.999991
1227			83	16	0.999991
1229	16			83	0.999991
1383		52		47	1.0
1476	58	41			1.0
1545	37		62		1.0
1562		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain