SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23924

Length: 2565 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23924
CGTCGTGACCTTGGCTGTCACTCAGGGGCAGAGGCGACTTTGAAAGCACCTGAAGAGTGCCTCGAGAATTTGCAGAGCCCCAGAAGGGAAATAAACACAGAAATCCCCGCTTACATTAATGGTGTAAAGCGAGGTCGGAGGTTCGAGATCGGGGCAGCCGGAGGCCGTTATGCAGAAGAGAGAAGAGTGTTCCTGCGAGCTCTGAGTTGTGAAATCCGACTAACGCTTGCCAGTCATTTGGTATGTAGCGTTCGCTTGTGGTAAAAATCTTCAAGCTTTAATTTGTAGGGTTTGATTGAATTTATTTTTTAGAATGTACTGTCTACTGAGATTGCAAGGTTGTTGCGAATGCCATGGGATTCTTGATTTAGATTCTAATTTGGTAAAGAATGAGCTTATTTTGTCACTTCATTTAATACTTTCGGGCTATAAATGGACATAGAGATAGAAACGTAGGGTTTGGAAGCGATACTGTGTGCGTGCTTGTTGTAAAGGCGAGGTTCGGTAGGGGACAAAGCGGAATAGAAATTAGAATAAGCCGTGCAGCCATGGTGGACAGCCAGAGCTGTTTGTTGCCAGAGATTTTAACGGGCTCCTTTGAGACTCTAGAACAGCAGCAGAAGCAGAAGCAGAAGCAGCGTTGGTACTTTGTGACATATTTGCTTGAGTTGCCTAAGATCGAGAACGGGATGGATGGCAATGACAAGGAGGGGGGTTTTGGGGATTTTCCGCATCGGAAAGTGAGGAGATTGTCGGAGTGTCGATGCCAATCTAGGTCTAGGATCTGCAGTTTTGCTGCGCAATCTTCCTCTGCCTTGTGTCCGTTGGAGTGTGCTGACTGCTCTGGGGAGCAGCATGGGGAATCCTGTCAGGGATCGGATGATTATATCATTCCCGGTCTCTATGATGATAACATAGAGAGAAATTGCCTCGCTCGATTGTCAAGATCAGATTATGGTTCGCTGGCTTTGGTGAATCGAAGGTTGCGTTCACTTGTTCGAAGCGGCGAGCTTTATGTTCTGAGGAGAGAACTTGGAATAGTGGAGCATTGGATTTACTTAGCGTGCAACCTGGAACGATGGGAGGCATTTGATCCCACACGGCAACGTTGGATGCGCTTGCCAAGGATGCAAGCCGATGACTGTTTTAATTTTGCAGATAAGGAGTCTTTGGCAGTTGGCACTGAATTGCTGTTTTTGGGAGGGAGGTGACAGGATTTGTCATCTGGAGGTACAGTATTTTGACACACAGCTGGTATAGAGGACCACCGATGAATCTGCCGAGGTGCTTGTTGGGTTCTGCCAGTTATAAGCAAATTGCCATTGTAGCAGGAGGTTGTGATGCAAGTGGGGGCGTGCTTAAATCTGCCGAACTTTATAATTCAGAGCAGGGCACTTGGGAAACACTGCCAGATATGCATTCCCCCCGAAAGCTCTGTTCAGGGTTTTTCATGGACAGCAAATTTTATGCCATAGGCGGGATGGCAAGCAATACAGAATCTCTTACCTGTGGCGAAGAATTTAATCTTGAAACAAGAACGTGGAGGAGGATTCCAGACATGTTTCCTGGAGGCAATGCAGCTGCCCATGCACCTCCCCTGGTTGCAGTAGTAAATAATCAGCTTTATGCTGTTGAGCACTCGCAAAATGAAGTCAAGAAATATAACAAGGATACCAATATGTGGAGTGTGTTGGGAAGATTGCCTGTAAGGGCAGACTCAACAAATGGCTGGGGTCTCGCATTTAAGGCCTGTGGCAATGACCTGATTGTCATTGGAGGTCAGAGAGGACCTGAGGGTGAAAGTATAGAGTTGAACTCATGGCATCCAACACCTGAAGGAGGACCTCCGGATTGGAATGTGCTGGCAGTTAAGGAGAATGCAGGGGTTTTTGTTTATAACTGTGCAGTGATGGGTTGTTAGCTTTTTTTTTTCTGTTACTTGATCTTGTCAGGTCTGTTCTGTACTATTTATTTATTCACAGAACTGCTGGACAAGATTACAATGGTTTGAGAGTAGCTGCTAATTTTTTTCTCCTTACATCTTTGGATCAAAGAAAGTGGCACAGGTGGTCCAACTGAGAGTAGCAAGTTCAGATAACAAGCCATCAATTCTTGTCTGAATTGTTATCTTGCTTTTCCCCCTATCAACAAGGCAATTAGTTTCATAGGGGTTCTCACATATGTCAATTTTTCCGACACTTTTTGTATTGTTCTGAAAATGATTACCTTGCTCAGACATCATCATGATGGGAATCTGAGGAGAATACGCACTACAGAAGAATGACAAAAAATATTTATGTTAAGATTCTTGATCCTTCCATGTGGATGCTGTTATAATATCCATTCAACAGCTACTACTGCAACTGTCACATGGAAAAGAAGAATGATAGAGATTATTGATGTTAAGATTCTTGATTCTTCCATGTGGATGCTGTTATAATGTCCTTTCAACAGCTACTACTGCAACTATGACATGGAAAAGAATAGAAGTATATTTTTCAGCCATTATGTAATGACTTTGGCTTCTTAATTCATGGTTTAAATTCAAAGCTGGGTTATCTTGTA

Ace file of the UniGene sp_v1.1_unigene23924

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	f-box family protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg: Overlapping hits, possible frame ERROR between 1202 and 1187,

Fln protein: MVDSQSCLLPEILTGSFETLEQQQKQKQKQRWYFVTYLLELPKIENGMDGNDKEGGFGDFPHRKVRRLSECRCQSRSRICSFAAQSSSALCPLECADCSGEQHGESCQGSDDYIIPGLYDDNIERNCLARLSRSDYGSLALVNRRLRSLVRSGELYVLRRELGIVEHWIYLACNLERWEAFDPTRQRWMRLPRMQADDCFNFADKESLAVGTxxxxxxxEVTGFVIWRYSILTHSWYRGPPMNLPRCLLGSASYKQIAIVAGGCDASGGVLKSAELYNSEQGTWETLPDMHSPRKLCSGFFMDSKFYAIGGMASNTESLTCGEEFNLETRTWRRIPDMFPGGNAAAHAPPLVAVVNNQLYAVEHSQNEVKKYNKDTNMWSVLGRLPVRADSTNGWGLAFKACGNDLIVIGGQRGPEGESIELNSWHPTPEGGPPDWNVLAVKENAGVFVYNCAVMGC*

Protein Length: 459

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGCAGAGGCGACTTTGAAAGCACCTGAAGAGTGCCTCGAGAATTTGCAGAGCCCCAGAAGGGAAATAAACACAGAAATCCCCGCTTACATTAATGGTGTAAAGCGAGGTCGGAGGTTCGAGATCGGGGCAGCCGGAGGCCGTTATGCAGAAGAGAGAAGAGTGTTCCTGCGAGCTCTGAGTTGTGAAATCCGACTAACGCTTGCCAGTCATTTGGTATGTAGCGTTCGCTTGTGGTAAAAATCTTCAAGCTTTAATTTGTAGGGTTTGATTGAATTTATTTTTTAGAATGTACTGTCTACTGAGATTGCAAGGTTGTTGCGAATGCCATGGGATTCTTGATTTAGATTCTAATTTGGTAAAGAATGAGCTTATTTTGTCACTTCATTTAATACTTTCGGGCTATAAATGGACATAGAGATAGAAACGTAGGGTTTGGAAGCGATACTGTGTGCGTGCTTGTTGTAAAGGCGAGGTTCGGTAGGGGACAAAGCGGAATAGAAATTAGAATAAGCCGTGCAGCC_-_ATGGTGGACAGCCAGAGCTGTTTGTTGCCAGAGATTTTAACGGGCTCCTTTGAGACTCTAGAACAGCAGCAGAAGCAGAAGCAGAAGCAGCGTTGGTACTTTGTGACATATTTGCTTGAGTTGCCTAAGATCGAGAACGGGATGGATGGCAATGACAAGGAGGGGGGTTTTGGGGATTTTCCGCATCGGAAAGTGAGGAGATTGTCGGAGTGTCGATGCCAATCTAGGTCTAGGATCTGCAGTTTTGCTGCGCAATCTTCCTCTGCCTTGTGTCCGTTGGAGTGTGCTGACTGCTCTGGGGAGCAGCATGGGGAATCCTGTCAGGGATCGGATGATTATATCATTCCCGGTCTCTATGATGATAACATAGAGAGAAATTGCCTCGCTCGATTGTCAAGATCAGATTATGGTTCGCTGGCTTTGGTGAATCGAAGGTTGCGTTCACTTGTTCGAAGCGGCGAGCTTTATGTTCTGAGGAGAGAACTTGGAATAGTGGAGCATTGGATTTACTTAGCGTGCAACCTGGAACGATGGGAGGCATTTGATCCCACACGGCAACGTTGGATGCGCTTGCCAAGGATGCAAGCCGATGACTGTTTTAATTTTGCAGATAAGGAGTCTTTGGCAGTTGGCACTxxxxxxxxxxxxxxxxxxxxxGAGGTGACAGGATTTGTCATCTGGAGGTACAGTATTTTGACACACAGCTGGTATAGAGGACCACCGATGAATCTGCCGAGGTGCTTGTTGGGTTCTGCCAGTTATAAGCAAATTGCCATTGTAGCAGGAGGTTGTGATGCAAGTGGGGGCGTGCTTAAATCTGCCGAACTTTATAATTCAGAGCAGGGCACTTGGGAAACACTGCCAGATATGCATTCCCCCCGAAAGCTCTGTTCAGGGTTTTTCATGGACAGCAAATTTTATGCCATAGGCGGGATGGCAAGCAATACAGAATCTCTTACCTGTGGCGAAGAATTTAATCTTGAAACAAGAACGTGGAGGAGGATTCCAGACATGTTTCCTGGAGGCAATGCAGCTGCCCATGCACCTCCCCTGGTTGCAGTAGTAAATAATCAGCTTTATGCTGTTGAGCACTCGCAAAATGAAGTCAAGAAATATAACAAGGATACCAATATGTGGAGTGTGTTGGGAAGATTGCCTGTAAGGGCAGACTCAACAAATGGCTGGGGTCTCGCATTTAAGGCCTGTGGCAATGACCTGATTGTCATTGGAGGTCAGAGAGGACCTGAGGGTGAAAGTATAGAGTTGAACTCATGGCATCCAACACCTGAAGGAGGACCTCCGGATTGGAATGTGCTGGCAGTTAAGGAGAATGCAGGGGTTTTTGTTTATAACTGTGCAGTGATGGGTTGTTAG___CTTTTTTTTTTCTGTTACTTGATCTTGTCAGGTCTGTTCTGTACTATTTATTTATTCACAGAACTGCTGGACAAGATTACAATGGTTTGAGAGTAGCTGCTAATTTTTTTCTCCTTACATCTTTGGATCAAAGAAAGTGGCACAGGTGGTCCAACTGAGAGTAGCAAGTTCAGATAACAAGCCATCAATTCTTGTCTGAATTGTTATCTTGCTTTTCCCCCTATCAACAAGGCAATTAGTTTCATAGGGGTTCTCACATATGTCAATTTTTCCGACACTTTTTGTATTGTTCTGAAAATGATTACCTTGCTCAGACATCATCATGATGGGAATCTGAGGAGAATACGCACTACAGAAGAATGACAAAAAATATTTATGTTAAGATTCTTGATCCTTCCATGTGGATGCTGTTATAATATCCATTCAACAGCTACTACTGCAACTGTCACATGGAAAAGAAGAATGATAGAGATTATTGATGTTAAGATTCTTGATTCTTCCATGTGGATGCTGTTATAATGTCCTTTCAACAGCTACTACTGCAACTATGACATGGAAAAGAATAGAAGTATATTTTTCAGCCATTATGTAATGACTTTGGCTTCTTAATTCATGGTTTAAATTCAAAGCTGGGTTATCTTGTA

Fln Alignment:

sp_v1.1_unigene23924___CSGEQHGESCQG--SDDYIIPGLYDDNIERNCLARLSRSDYGXXXXXXXXXXXXXXXGELYVLRRELGIVEHWIYLACNLERWEAFDPTRQRWMRLPRMQADDCFNFADKESLAVGTExxxxxREVTGFVIWRYSILTHSWYRGPPMNLPRCLLGSASYKQIAIVAGGCDASGGVLKSAELYNSEQGTWETLPDMHSPRKLCSGFFMDSKFYAIGGMASNTESLTCGEEFNLETRTWRRIPDMFPGGXXXXXXXXXXXXXXXQLYAVEHSQNEVKKYNKDTNMWSVLGRLPVRADSTNGWGLAFKACGNDLIVIGGQRGPEGESIELNSWHPTPEGGPP-DWNVLAVKENAGVFVYNCAVMGC
B8LQD3_______________CQGEQYDAENQGEGTHDSMIPGLHDD-LGLDCLALTSRSDYGSLACLNKRFNYLVRSGYLYHLRRQLGIVEQWIYLMCNLIGWEAFDPYRERWMRLHRIPSDECFNYADKESLAVGTExxxxxREVFGFAIWRYSLLTHSWARGPGMASPRCLFGSSSYGEIAIVAGGSDQNGTVLKSAELYNSELGTWETLPDMHSPRKLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLQTRTWRRIRDMFPGGNRATHAPPLVAVVNNQLYAVEYSRNEVKKYNKENNTWSVVGRLPVRADSTNGWGLAFKACGNEIIVIGGQRGPEGECIVLNSWRPSPEAGRPIEWKVLAVKWHAGVFVYNCAVMSC

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
141	16		66	16	0.988813
142		16		83	0.994512
144		83		16	0.994512
219	85			14	0.993533
222	85		14		0.993533
230		85	14		0.993533
232	85			14	0.993533
237		14		85	0.993533
241		14	85		0.993533
242	14			85	0.993533
260		11	88		0.923564
263	77	11	11		0.968132
264	88		11		0.923564
265	88			11	0.923564
266	88		11		0.923564
268		11		88	0.923564
274	88		11		0.923564
279		11		88	0.923564
281	88	11			0.923564
283	11			88	0.923564
558	90		10		0.90298
559			90	10	0.90298
561		90	10		0.90298
562	90			10	0.90298
565		10	90		0.90298
569			10	90	0.90298
570		10		90	0.90298
574		10		90	0.90298
575	10		90		0.90298
654	75		25		1.0
1295			66	33	0.997452
1643	11		88		0.923564
1883	90		10		0.90298
1884		14	85		0.993533
1885			85	14	0.993533
1886		14	85		0.993533
1939			25	75	0.996473
1945	75		25		0.996473
1947		75	25		0.996473
1949		25		75	0.996473
1950	25		75		0.996473
2046			10	90	0.90298
2048		10		90	0.90298
2052		10		90	0.90298
2054	90			10	0.90298
2055	90			10	0.90298
2056	90		10		0.90298
2058	90	10			0.90298
2059	90			10	0.90298
2063		10	90		0.90298
2064	10		90		0.90298
2066	90			10	0.90298
2203		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
616	638	AGCAGA AGCAGA AGCAGA AGCAG	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain