SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23921

Length: 1278 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23921

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock-like protein n=2 Tax=Picea RepID=Q40868_PICGL	-	-	6.99949e-42	62%
FL-Next	tr=Heat shock-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	62%
Blast2go	protein	-	-	1.18452e-41	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q40868

Fln msg: your sequence is longer than subject: 258 - 158

Fln protein: MASQRESAASFYAVLGVSKDSSDVEIRSAYRKLAKKWHPDKWSKDPSLAEQAKLRFQEIQEAYSVLSDDTKRAMYDVGVYDSEDDVDGFSDFLDEMATMMANVKDESNTQDSLEELQQTFVKLVNDNWISSDVFKQSEPPTKMEGANFENNDLLNEEMGEEWWGDDSFYDLLNDEEMAGEWLGDDTFYGLYSNIHEDNDLYSAVQSHHQIAPEEKDLFINNKNKKPRAHIREGTGFEMYAFSQGSGLNSYPSTTFVA*

Protein Length: 259

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGTCGTGACCTTGGCTGGCAATTCGGCATTATATTTGGTAGTTCTGTGCTTGAATTGATCGATATTGGTTGAAATTTTTGAGGTTTGGGAGGTTTAGGGAAGCAGATTATTGCACAGGTTTAGGAGGTTTAGGGAAGGAAATTACAGTCTGTTGTGTGTAATCAGGTTGGGCTTATAGTTGTCTGTGGGAAGAGGATCGATACTGTGGTTTTTCAGA_-_ATGGCATCTCAGAGGGAATCGGCTGCATCGTTTTATGCAGTTCTCGGCGTTAGTAAAGATTCATCTGATGTTGAGATACGCAGCGCTTACAGAAAACTGGCAAAGAAATGGCATCCTGACAAATGGTCCAAAGACCCATCTTTGGCTGAGCAGGCCAAGTTAAGATTCCAAGAAATACAAGAAGCATATTCAGTTCTATCAGATGATACCAAAAGGGCAATGTATGATGTAGGCGTATACGATTCGGAGGATGATGTAGATGGATTCTCTGATTTTCTAGATGAGATGGCAACAATGATGGCCAATGTTAAGGATGAGAGTAACACACAGGATAGTCTTGAGGAACTTCAGCAAACGTTTGTGAAATTGGTGAATGATAATTGGATTTCGTCGGACGTATTCAAGCAATCTGAACCTCCTACGAAAATGGAAGGAGCAAATTTTGAAAATAACGATTTACTGAATGAGGAGATGGGCGAGGAATGGTGGGGTGATGATTCATTCTATGATTTATTGAATGATGAGGAGATGGCAGGGGAATGGTTGGGTGATGATACATTCTATGGCCTCTATTCTAACATTCATGAAGATAACGATCTATATTCTGCCGTTCAAAGCCACCATCAAATTGCACCAGAGGAGAAAGATCTGTTTATAAACAATAAGAACAAGAAACCCAGAGCTCATATTCGAGAAGGAACTGGCTTTGAAATGTATGCTTTCAGCCAGGGATCAGGGTTGAATTCTTACCCTTCTACAACTTTTGTTGCATGA___ATATCTATAAAATTATGAATTTATTTCTACTTGTTAGTGATGACTACATAATTCCATTTTCACCATCACTCATTCATATTCTGTATATATCAAAATGGAATAGAAATTTGATCATCTCCAATGGGATGAGAGATGAAGTGTCTTCTGTAGCTTGCTCTGTTCAAAATCAGTCCGCCATCAGGCATTGATGATTCGGTTTGTGACTAGGAAAATTCTCGGACATATTATGAAGCTCATCAGCTATATCTGTTTATGCTTAAAT

Fln Alignment:

sp_v1.1_unigene23921___SFYAVLGVSKDSSDVEIRSAYRKLAKKWHPDKWSKDPSLAEQAKLRFQEIQEAYSVLSDDTKRAMYDVGVYDSEDDVDGFSDFLDEMATMMANVKDESNTQDSLEELQQTFVKLVNDNWISSDVFK
Q40868_______________TFYSILGVNKDSSSAEIRSAYRKLAMKWHPDKWSTDPSSSETAKLRFQQIQEAYSVLSDDTKRALYDAGMYEPSEDMDAFCDFLDELSSLIATVKVQSNKDDELLQLQEMFTKMLEEDWFSTDNFE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
116		5	94		0.998578
141	63		36		1.0
590			16	83	0.994512
591		83	16		0.994512
592	83		16		0.994512
695		25		75	0.996473
719		75	25		0.996473
869	81			18	0.999994
871			16	83	0.999991
1154			87	12	0.992554
1226	66	33			0.997452
1236	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain