SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23919

Length: 643 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene23919 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein n=1 Tax=Medicago truncatula RepID=Q2HRJ5_MEDTR	-	-	3.0e-15	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	snakin-1	-	-	4.17587e-43	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gibberellin regulated protein	IPR003854	-	4.17587e-43	65%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
337	16			83	0.994512
377	16	83			0.994512
384			83	16	0.994512
385		83	16		0.994512
386	16	83			0.994512
387			16	83	0.994512
395		83	16		0.994512
397		16	83		0.994512
398	16			83	0.994512
399	16	83			0.994512
400		83	16		0.994512
401	83		16		0.994512
408	83		16		0.994512
604	87		12		0.992554
610		12		87	0.992554
613	85	14			0.993533
617	14	85			0.993533
619	20	40		40	1.0
621		60	40		1.0
622	40	60			1.0
623	20	40	40		1.0
628	66			33	0.997452
629	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain