SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23911

Length: 2058 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23911
TGAAGACACTTTGAATCTCAATGTTCTCGATAATGTTTCGCCACTTACCAAAAACGTGACACTTTGAATCCTTACCACGTAACAGTAAAGGCGACCAGAGGCTCATGTAGGGCATGTCACGTGGGTGTAGATGATGGAGCAGATCTCCATTGTTGAGTTGAGAGGTTGGGAACAATTCATAGAAGACGGTTCAACTATCTGGACTCTGTAATGTCGATCAAAGCGGCGGCTTCGCCACAACATCAACTGCTTCCTTCCCCGAGCACTTGCTCGAATGTATCGGTCCCAATCTTGCTCAAGTCCTCGTCTATGTTTCACGGCAAACGCAGAGGTTTCAGGTTCAATTCTCTGCGATGTCAATCTTTGCAATCCACGGCTGTTTCGAAGGACCTCTCGACGCAGGCGGGGAACGGATTCCTAGAGCCGAATGCTGTGGAGCGCAATGTGGTTCGTCTGGGGTTGCCGAGCAAGGGTCGAATGGCCGCCGATACACTTGATCTACTCAAGGATTGTCAGCTTGCAGTGCGGCAGGTTAATCCTAGGCAGTATGTTGCAGATATACCAGGACTATCCAAACTAGAAGTCTGGTTTCAACGACCAAAAGATGTCGTTCGTAAGCTTCTCACGGGGGATTTAGACCTCGGGATTGTCGGTATTGATACTGTTGCTGAATTTGGACAGGACGATGAGGACTTGATCTTCGTTCATGATGCCCTTGAGTATGGGGAGTGTCGGTTGTCTATTGCAATTCCAAAGTATGGAATTTTTGAGAACATTTCATCTATGGATGAACTGGCAGCAATGCCTCAATGGACTGAGAACAGGCCTCTACGAATTGCAACAGGATTTACTTACCTAGGTCCAAAATTTGTGAAGGAGAAGGGGCTAAAGAATGTCAAGTTTTCGACAGCTGATGGAGCATTGGAAGCAGCTCCTGCTATGGGTATAGCCGATGCCATTTTGGACCTTGTGAGCAGTGGAACAACTTTGCGTGAAAACAATCTCAAGGAAATAAAGGATGGAACTGTTCTAGAGAGTCAGGCTGTATTTGTTGCAAGTAAGAGAGCACTTCAGCGCAAGGATGTGCTAGAGGCCGCACATGAAATGCTCGAAAGGTTGGAAGCCCATTTAAGAGCAGTTGGTCAGTTTACGGTCACTGCAAACATGCGAGGAAGTTCAGCAGAGGAAGTGGCAGAACGTGTAATCAAGCAAACTGATTTTCGTGGTTTACAGGGGCCCACTGTGAGTCCTGTCTTTTCCAAGAGAAATGGAGAAGTTAAGCCAGATTATTATGCCATAGTCATATGTGTACCCAAAAAACAACTTTATGATTCTGTCCGCCAGTTGAGAGCAATTGGAGGAAGTGGAGTTCTTGTTTCTCCATTAACATATATTTTTGATGAAGAACCACCAAGATGGCGCAAACTTTTGGACAAGTTAAATCTTTGACTGCATTCCTATGCCTGCTTCGTTTGCTCACCACTTGTTGTAACAATTCCCTTGTGCAGGAAAAATCTTAGACACTGCTTATTGCTCGGCAGTTTTCCCTCTAGTCTAGTTGAGTTACATTATTACAATTTCAAGTTGGATGAGAAAGAAGGTAACAATGAAGATCTATATCAACCATTTGTATTGAATACACCAGATTTAAGCAGCATTCCCCCATCTTGCTGTCAGGACAGCCAAAGACACTAACGTTTTAAACAGAACAGGTTATATTTATACTTCTGTATATCAAATTTGTTCATCTAATTCTGTCCCGCTCTTATTACTCAAAAGCGTCTTCAGGAATGTTTTAGTCAGTCTGCCAATATCTGTATTGTCTATAGTTTCTTACCCCGGCACCCATAATTGTTGGTAGCAATCTGTTTTCGTCTATTTTCTGTTTGTTTCATGACTAACTGGATATGATAAACTTTCAATGAGCTGGGATGACAATTTTGTATTTTGTTGGCATTATTGGAAATTATTTTATTGCATGAGGCCAGCAGAGTAAATCCCACTAAATCTATATTATGTTTTATTGGCAGAGCTTGAATGACATTATAGAATGTTACT

Ace file of the UniGene sp_v1.1_unigene23911

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1); ATP phosphoribosyltransferase (EC:2.4.2.17)	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	atp phosphoribosyl transferase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	ATP phosphoribosyltransferase.	EC:2.4.2.17	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Histidine metabolism	00340	81%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	histidine biosynthetic process	GO:0000105	Biological Process	0.0	81%
Blast2go	ATP phosphoribosyltransferase activity	GO:0003879	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Blast2go	ATP phosphoribosyltransferase HisG	IPR001348	-	81%
Blast2go	Nitrogen regulatory PII-like, alpha/beta	IPR011322	-	81%
Blast2go	Histidine biosynthesis HisG, C-terminal	IPR013115	-	81%
Blast2go	ATP phosphoribosyltransferase, catalytic domain	IPR013820	-	81%
Blast2go	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	81%
Blast2go	ATP phosphoribosyltransferase, conserved site	IPR018198	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY9

Fln msg:

Fln protein: MSIKAAASPQHQLLPSPSTCSNVSVPILLKSSSMFHGKRRGFRFNSLRCQSLQSTAVSKDLSTQAGNGFLEPNAVERNVVRLGLPSKGRMAADTLDLLKDCQLAVRQVNPRQYVADIPGLSKLEVWFQRPKDVVRKLLTGDLDLGIVGIDTVAEFGQDDEDLIFVHDALEYGECRLSIAIPKYGIFENISSMDELAAMPQWTENRPLRIATGFTYLGPKFVKEKGLKNVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKDGTVLESQAVFVASKRALQRKDVLEAAHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAERVIKQTDFRGLQGPTVSPVFSKRNGEVKPDYYAIVICVPKKQLYDSVRQLRAIGGSGVLVSPLTYIFDEEPPRWRKLLDKLNL*

Protein Length: 414

Fln nts: TGAAGACACTTTGAATCTCAATGTTCTCGATAATGTTTCGCCACTTACCAAAAACGTGACACTTTGAATCCTTACCACGTAACAGTAAAGGCGACCAGAGGCTCATGTAGGGCATGTCACGTGGGTGTAGATGATGGAGCAGATCTCCATTGTTGAGTTGAGAGGTTGGGAACAATTCATAGAAGACGGTTCAACTATCTGGACTCTGTA_-_ATGTCGATCAAAGCGGCGGCTTCGCCACAACATCAACTGCTTCCTTCCCCGAGCACTTGCTCGAATGTATCGGTCCCAATCTTGCTCAAGTCCTCGTCTATGTTTCACGGCAAACGCAGAGGTTTCAGGTTCAATTCTCTGCGATGTCAATCTTTGCAATCCACGGCTGTTTCGAAGGACCTCTCGACGCAGGCGGGGAACGGATTCCTAGAGCCGAATGCTGTGGAGCGCAATGTGGTTCGTCTGGGGTTGCCGAGCAAGGGTCGAATGGCCGCCGATACACTTGATCTACTCAAGGATTGTCAGCTTGCAGTGCGGCAGGTTAATCCTAGGCAGTATGTTGCAGATATACCAGGACTATCCAAACTAGAAGTCTGGTTTCAACGACCAAAAGATGTCGTTCGTAAGCTTCTCACGGGGGATTTAGACCTCGGGATTGTCGGTATTGATACTGTTGCTGAATTTGGACAGGACGATGAGGACTTGATCTTCGTTCATGATGCCCTTGAGTATGGGGAGTGTCGGTTGTCTATTGCAATTCCAAAGTATGGAATTTTTGAGAACATTTCATCTATGGATGAACTGGCAGCAATGCCTCAATGGACTGAGAACAGGCCTCTACGAATTGCAACAGGATTTACTTACCTAGGTCCAAAATTTGTGAAGGAGAAGGGGCTAAAGAATGTCAAGTTTTCGACAGCTGATGGAGCATTGGAAGCAGCTCCTGCTATGGGTATAGCCGATGCCATTTTGGACCTTGTGAGCAGTGGAACAACTTTGCGTGAAAACAATCTCAAGGAAATAAAGGATGGAACTGTTCTAGAGAGTCAGGCTGTATTTGTTGCAAGTAAGAGAGCACTTCAGCGCAAGGATGTGCTAGAGGCCGCACATGAAATGCTCGAAAGGTTGGAAGCCCATTTAAGAGCAGTTGGTCAGTTTACGGTCACTGCAAACATGCGAGGAAGTTCAGCAGAGGAAGTGGCAGAACGTGTAATCAAGCAAACTGATTTTCGTGGTTTACAGGGGCCCACTGTGAGTCCTGTCTTTTCCAAGAGAAATGGAGAAGTTAAGCCAGATTATTATGCCATAGTCATATGTGTACCCAAAAAACAACTTTATGATTCTGTCCGCCAGTTGAGAGCAATTGGAGGAAGTGGAGTTCTTGTTTCTCCATTAACATATATTTTTGATGAAGAACCACCAAGATGGCGCAAACTTTTGGACAAGTTAAATCTTTGA___CTGCATTCCTATGCCTGCTTCGTTTGCTCACCACTTGTTGTAACAATTCCCTTGTGCAGGAAAAATCTTAGACACTGCTTATTGCTCGGCAGTTTTCCCTCTAGTCTAGTTGAGTTACATTATTACAATTTCAAGTTGGATGAGAAAGAAGGTAACAATGAAGATCTATATCAACCATTTGTATTGAATACACCAGATTTAAGCAGCATTCCCCCATCTTGCTGTCAGGACAGCCAAAGACACTAACGTTTTAAACAGAACAGGTTATATTTATACTTCTGTATATCAAATTTGTTCATCTAATTCTGTCCCGCTCTTATTACTCAAAAGCGTCTTCAGGAATGTTTTAGTCAGTCTGCCAATATCTGTATTGTCTATAGTTTCTTACCCCGGCACCCATAATTGTTGGTAGCAATCTGTTTTCGTCTATTTTCTGTTTGTTTCATGACTAACTGGATATGATAAACTTTCAATGAGCTGGGATGACAATTTTGTATTTTGTTGGCATTATTGGAAATTATTTTATTGCATGAGGCCAGCAGAGTAAATCCCACTAAATCTATATTATGTTTTATTGGCAGAGCTTGAATGACATTATAGAATGTTACT

Fln Alignment:

sp_v1.1_unigene23911___MSIKAAASPQHQLLPSPSTCSNVSVPILLKSSSMFHGKRRGFRFNSLRCQSLQ-STAVSKDLSTQAGNGFLEPNAVERNVVRLGLPSKGRMAADTLDLLKDCQLAVRQVNPRQYVADIPGLSKLEVWFQRPKDVVRKLLTGDLDLGIVGIDTVAEFGQDDEDLIFVHDALEYGECRLSIAIPKYGIFENISSMDELAAMPQWTENRPLRIATGFTYLGPKFVKEKGLKNVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKDGTVLESQAVFVASKRA-LQRKDVLEAAHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAERVIKQTDFRGLQGPTVSPVFSKRNGEVKPDYYAIVICVPKKQLYDSVRQLRAIGGSGVLVSPLTYIFDEEPPRWRKLLDKLNL
B8LKY9_______________MSIKAAAS-QQQLLPSLSTYSNVSVPILLKSSSVFYDKRRGLRFDSLRCQSSSASTAVSKDLSTQVGNGFPESNAVERNVVRLGLPSKGRMATDTLDLLKDCQLAVRQVNPRQYVADIPGLSNLEVWFQRPKDVVRKLLTGDLDLGIVGIDTVSEFGQGNEDLIFVHDALEYGECRLSIAIPKYGIFQNISSMDELATMPEWTENRPLRITTGFTYLGPKFVKEKGLKHVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKGGTVLESQAVFVASKRALLQRKGVLEATHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAECVLEQTNFRGLQGPTVSPVFSKKNGEVKPDYYAIVICVPKKQLYDSVCQLRKIGGSGVLVSPLTYIFDEEPPRWRKLLDQLNL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
424			20	80	0.995493
529	33		66		0.997452
604	66		33		0.997452
1445	25	75			0.996473
1447			25	75	0.996473
1448			25	75	0.996473
1507		90		10	0.90298
1509		11	88		0.923564
1510		11	88		0.923564
1511	88			11	0.923564
1512	88			11	0.923564
1513	88		11		0.923564
1514	88		11		0.923564
1515	88	11			0.923564
1517		90	10		0.90298
1522	80	13		6	0.999961
1567	25		75		1.0
1620	20		80		1.0
1624	20		80		1.0
1647	78		21		1.0
1697	66	33			1.0
1715		64		35	1.0
1805	50		50		1.0
1900		66		33	0.997452
1910	33	66			0.997452
1982		20		80	0.995493
1985			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain