SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23904

Length: 2996 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23904
CGTCGTGACCTTGGCTGTCACTCAATACAAAGACGCAATGGCCTCTTAGGAACCGTTGTGAAAAACTGCTTAGTCACATTTGAAGCTCAGGTTGCTCCCCGATCCATCAGATCCGTCCATTTTTGCAAGAATTATCTTTAGATTGGCTCAGAACTCGCTCTTATTGGTCGTGATCAGTAATGGCTCAGATACTGATTCATGGAAATCTCCATGTGACTATCTTCGAGGCAGATTCACTGAAGGATCCCGATCGAGCAACGGGAGGAGCTCCCAAGATCTTCAGAAAGTTAATTCAGGGCATTGAAGAGACCGTGGGGATTGGCAAAGGAGCTAACAGACTGTACGCGACCATCGATCTGGAGAAAGCTCTAGTGGGTCGAACTCGGATCATCCAAGACGAACCCAAGAGCCCACGATGGTATGAGTCCTTTCACATTTACTGTGCTCACCAAGCTGGCAATGTAGTTTTTAGTGTTAAAGATGATAAACCAATTGGGGCAGTGGTGGTCGGGAGAGCCTATGTACCTGTGAAGGATCTCCTAGATGGCCAAGAGTTCGAGCAGTGGCTCCAGCTGGTTAATGAAAAAATGGAACCGATTGGGGGCGGGGCAAGGATTCGTGTGAAATTGCAGTATTTTGATGTTAGCCATGATCCAAACTGGGCTAGAGGTATCAGGTCTCGGAAGTTCCCTGGGGTCCCATATACCTTTTTTCCTCATAGGAAAGGGTGTAAGGTCACTCTGTACCAAGATGCCCATGTGCCTGATAAGTTTGTGCCCAAGATCCCTTTGGCTGGAGGACAGCTCTACCAGCCTCATAGATGCTGGGAGGATATATTTGATGCAATTAACAATGCTCAGCATCTGATTTACATTACTGGATGGTCTGTTTACACTGAGATCACCTTGATCAGGGACTCCAAGAGGCCAAAGCCTGGTGGTGATGAGACACTAGGTCAGCTTCTGAAGAGGAAGGCCAGTGAAGGGGTCAGGGTGCTTATGCTTGTCTGGGATGACAGGACCTCTGTTGGGCTATTGAAGAAGGATGGATTGATGGCCACCCATGATGAAGAGACGTTGCATTACTTCGATGGATCAGATGTGAATTGTGTCCTGTGTCCAAGGAATCCCGATAATGGGCAGAGCTTCGTGCAGGACTTGCAGATCTCGACAATGTTTACGCATCATCAGAAGATTGTTGTCGTTGACAGCCCTCTTCCTGGAGGTGGTTCAGAGCAGAGGAGGATCGTGAGCTTTGTTGGAGGGATCGATCTGTGTGATGGAAGGTATGATACCCAATTCCATTCTCTGTTTAGGACTTTGGATTCTGTTCATCACGCTGATTTCCATCAGCCGAATTTCACTGGTGGGTCGATTGATAAAGGAGGGCCCAGAGAGCCCTGGCATGATATTCATTCCAAGCTGGAAGGGTCTGTTGCTTGGGATGTGCTTTATAACTTTGAGCAGAGGTGGAGGAAGCAAGGTCATAAGGATTTGCTCTTGCCTCTGAGACAGTTTACGGAGATCATTCCTCCTTCGCCCGTGACATATGAAAATGACCAGGAGACTTGGAATGTTCAAGTCTTTAGATCGATCGATGGAGGAGCTGCATTTGGGTTTCCTGAAACACCAGAGGATGCAGCTAGATCAGGGTTGGTTAGTGGAAAGGATAACATCATAGATAGGAGTATCCAGGATGCTTATATCAACGCCATCCGTCGTGCGAAGGACTTCATCTATATAGAGAATCAGTACTTTTTGGGAAGCTCTTACGGATGGAAGCCAGACAATATCAAGGTGGAAGACATAGGAGCTCTTCACCTTATTCCCAAGGAATTGTCTCTAAAAATAGTTACCAAGATAGAAGCAGGAGAACAATTCAGAGTCTATATTGTTGTGCCAATGTGGCCAGAGGGGTTACCAGAGAGTGGCTCTGTGCAGGCAATCTTGGATTGGCAGAGGAGGACGATGGAGATGATGTATACAGATATTGCGCAAGCTCTGCGTGCCAAACAAATCTACGATGCAGATCCCAAGGATTATCTGACCTTTTTCTGTTTGGCAAATAGAGAGGTCAAGAAAAGTGGTGAGTATATACCACAGGAGCATCCGGAGGAAGATTCTGACTACAAGAAAGCTCAAGAAAACAGGCGTTTTATGATTTATGTGCATGCCAAGATGATGATAGTTGACGATGAGTACATTATTATTGGATCAGCAAATATCAACCAACGTTCCATGGATGGTGCAAGAGACTCTGAGATAGCAATGGGGGCTTACCAACCATATCATCTGGCAGTTAATGAGCCAGCCAGAGGGCAAATCCATGGTTTCAGGATGTCTCTCTGGTACGAACACACTGGATTGCTAGATAACTTGTTCCTTCAGCCCGAAAGCCTAGAATGTATCAGGAAAATGAACAAAATAGCAGAACGATACTGGGATTTATATAGCAGTGAAAGTTTGGAACGTGATCTGCCGGGCCATTTGTTGATGTATCCTGTGGGTGTCACAAATGCTGGTGAAGTGACAGAGTTACCTGGTACAGAATTCTTTCCAGATACAAAGGCTCGTGTATTGGGCACCAAATCAGACTACCTGCCACCCATTCTGACCACATAGAGAGTTGGAGCGGTAGTACTCCAATAGCTGTTTGGTCTTTCGTAACACATACTATATTTAGAGCTCTTGCCCTTTCTTCCCGTTGTTGGTATTTGCACTAAAATACAGAGTCGTCTTTAGAGCTCACACAAAGCTTGTGGAAATATCTAATCCGGTGAAAACTTTTCCCTTTTTCTCTTAATTTTCTCTTTAGTCAAGCAGATTAACAGACAAACTAGAAAACTGAATTGTTAGGCATTGACCTTTTGGTCAATAGCATCTACATTCGATACCTATAGAGCTATGTTATATATGTATTTGCAGGGTTTTAACTTTTTAATAACTCAGTGTTGAATATTTGGCATTCAAATGTTATGTGAAGCTCTTATATAATGA

Ace file of the UniGene sp_v1.1_unigene23904

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipase D2 n=2 Tax=Papaver somniferum RepID=Q8VWE9_PAPSO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	phospholipase d	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	88%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	88%
Blast2go	Phospholipase D/Transphosphatidylase	IPR001736	-	88%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	88%
Blast2go	Phospholipase D, plant	IPR011402	-	88%
Blast2go	Phospholipase D	IPR015679	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV59

Fln msg: your sequence is longer than subject: 814 - 482

Fln protein: MAQILIHGNLHVTIFEADSLKDPDRATGGAPKIFRKLIQGIEETVGIGKGANRLYATIDLEKALVGRTRIIQDEPKSPRWYESFHIYCAHQAGNVVFSVKDDKPIGAVVVGRAYVPVKDLLDGQEFEQWLQLVNEKMEPIGGGARIRVKLQYFDVSHDPNWARGIRSRKFPGVPYTFFPHRKGCKVTLYQDAHVPDKFVPKIPLAGGQLYQPHRCWEDIFDAINNAQHLIYITGWSVYTEITLIRDSKRPKPGGDETLGQLLKRKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETLHYFDGSDVNCVLCPRNPDNGQSFVQDLQISTMFTHHQKIVVVDSPLPGGGSEQRRIVSFVGGIDLCDGRYDTQFHSLFRTLDSVHHADFHQPNFTGGSIDKGGPREPWHDIHSKLEGSVAWDVLYNFEQRWRKQGHKDLLLPLRQFTEIIPPSPVTYENDQETWNVQVFRSIDGGAAFGFPETPEDAARSGLVSGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYGWKPDNIKVEDIGALHLIPKELSLKIVTKIEAGEQFRVYIVVPMWPEGLPESGSVQAILDWQRRTMEMMYTDIAQALRAKQIYDADPKDYLTFFCLANREVKKSGEYIPQEHPEEDSDYKKAQENRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLAVNEPARGQIHGFRMSLWYEHTGLLDNLFLQPESLECIRKMNKIAERYWDLYSSESLERDLPGHLLMYPVGVTNAGEVTELPGTEFFPDTKARVLGTKSDYLPPILTT*

Protein Length: 815

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACAAAGACGCAATGGCCTCTTAGGAACCGTTGTGAAAAACTGCTTAGTCACATTTGAAGCTCAGGTTGCTCCCCGATCCATCAGATCCGTCCATTTTTGCAAGAATTATCTTTAGATTGGCTCAGAACTCGCTCTTATTGGTCGTGATCAGTA_-_ATGGCTCAGATACTGATTCATGGAAATCTCCATGTGACTATCTTCGAGGCAGATTCACTGAAGGATCCCGATCGAGCAACGGGAGGAGCTCCCAAGATCTTCAGAAAGTTAATTCAGGGCATTGAAGAGACCGTGGGGATTGGCAAAGGAGCTAACAGACTGTACGCGACCATCGATCTGGAGAAAGCTCTAGTGGGTCGAACTCGGATCATCCAAGACGAACCCAAGAGCCCACGATGGTATGAGTCCTTTCACATTTACTGTGCTCACCAAGCTGGCAATGTAGTTTTTAGTGTTAAAGATGATAAACCAATTGGGGCAGTGGTGGTCGGGAGAGCCTATGTACCTGTGAAGGATCTCCTAGATGGCCAAGAGTTCGAGCAGTGGCTCCAGCTGGTTAATGAAAAAATGGAACCGATTGGGGGCGGGGCAAGGATTCGTGTGAAATTGCAGTATTTTGATGTTAGCCATGATCCAAACTGGGCTAGAGGTATCAGGTCTCGGAAGTTCCCTGGGGTCCCATATACCTTTTTTCCTCATAGGAAAGGGTGTAAGGTCACTCTGTACCAAGATGCCCATGTGCCTGATAAGTTTGTGCCCAAGATCCCTTTGGCTGGAGGACAGCTCTACCAGCCTCATAGATGCTGGGAGGATATATTTGATGCAATTAACAATGCTCAGCATCTGATTTACATTACTGGATGGTCTGTTTACACTGAGATCACCTTGATCAGGGACTCCAAGAGGCCAAAGCCTGGTGGTGATGAGACACTAGGTCAGCTTCTGAAGAGGAAGGCCAGTGAAGGGGTCAGGGTGCTTATGCTTGTCTGGGATGACAGGACCTCTGTTGGGCTATTGAAGAAGGATGGATTGATGGCCACCCATGATGAAGAGACGTTGCATTACTTCGATGGATCAGATGTGAATTGTGTCCTGTGTCCAAGGAATCCCGATAATGGGCAGAGCTTCGTGCAGGACTTGCAGATCTCGACAATGTTTACGCATCATCAGAAGATTGTTGTCGTTGACAGCCCTCTTCCTGGAGGTGGTTCAGAGCAGAGGAGGATCGTGAGCTTTGTTGGAGGGATCGATCTGTGTGATGGAAGGTATGATACCCAATTCCATTCTCTGTTTAGGACTTTGGATTCTGTTCATCACGCTGATTTCCATCAGCCGAATTTCACTGGTGGGTCGATTGATAAAGGAGGGCCCAGAGAGCCCTGGCATGATATTCATTCCAAGCTGGAAGGGTCTGTTGCTTGGGATGTGCTTTATAACTTTGAGCAGAGGTGGAGGAAGCAAGGTCATAAGGATTTGCTCTTGCCTCTGAGACAGTTTACGGAGATCATTCCTCCTTCGCCCGTGACATATGAAAATGACCAGGAGACTTGGAATGTTCAAGTCTTTAGATCGATCGATGGAGGAGCTGCATTTGGGTTTCCTGAAACACCAGAGGATGCAGCTAGATCAGGGTTGGTTAGTGGAAAGGATAACATCATAGATAGGAGTATCCAGGATGCTTATATCAACGCCATCCGTCGTGCGAAGGACTTCATCTATATAGAGAATCAGTACTTTTTGGGAAGCTCTTACGGATGGAAGCCAGACAATATCAAGGTGGAAGACATAGGAGCTCTTCACCTTATTCCCAAGGAATTGTCTCTAAAAATAGTTACCAAGATAGAAGCAGGAGAACAATTCAGAGTCTATATTGTTGTGCCAATGTGGCCAGAGGGGTTACCAGAGAGTGGCTCTGTGCAGGCAATCTTGGATTGGCAGAGGAGGACGATGGAGATGATGTATACAGATATTGCGCAAGCTCTGCGTGCCAAACAAATCTACGATGCAGATCCCAAGGATTATCTGACCTTTTTCTGTTTGGCAAATAGAGAGGTCAAGAAAAGTGGTGAGTATATACCACAGGAGCATCCGGAGGAAGATTCTGACTACAAGAAAGCTCAAGAAAACAGGCGTTTTATGATTTATGTGCATGCCAAGATGATGATAGTTGACGATGAGTACATTATTATTGGATCAGCAAATATCAACCAACGTTCCATGGATGGTGCAAGAGACTCTGAGATAGCAATGGGGGCTTACCAACCATATCATCTGGCAGTTAATGAGCCAGCCAGAGGGCAAATCCATGGTTTCAGGATGTCTCTCTGGTACGAACACACTGGATTGCTAGATAACTTGTTCCTTCAGCCCGAAAGCCTAGAATGTATCAGGAAAATGAACAAAATAGCAGAACGATACTGGGATTTATATAGCAGTGAAAGTTTGGAACGTGATCTGCCGGGCCATTTGTTGATGTATCCTGTGGGTGTCACAAATGCTGGTGAAGTGACAGAGTTACCTGGTACAGAATTCTTTCCAGATACAAAGGCTCGTGTATTGGGCACCAAATCAGACTACCTGCCACCCATTCTGACCACATAG___AGAGTTGGAGCGGTAGTACTCCAATAGCTGTTTGGTCTTTCGTAACACATACTATATTTAGAGCTCTTGCCCTTTCTTCCCGTTGTTGGTATTTGCACTAAAATACAGAGTCGTCTTTAGAGCTCACACAAAGCTTGTGGAAATATCTAATCCGGTGAAAACTTTTCCCTTTTTCTCTTAATTTTCTCTTTAGTCAAGCAGATTAACAGACAAACTAGAAAACTGAATTGTTAGGCATTGACCTTTTGGTCAATAGCATCTACATTCGATACCTATAGAGCTATGTTATATATGTATTTGCAGGGTTTTAACTTTTTAATAACTCAGTGTTGAATATTTGGCATTCAAATGTTATGTGAAGCTCTTATATAATGA

Fln Alignment:

sp_v1.1_unigene23904___MFTHHQKIVVVDSPLPGGGSEQRRIVSFVGGIDLCDGRYDTQFHSLFRTLDSVHHADFHQPNFTGGSIDKGGPREPWHDIHSKLEGSVAWDVLYNFEQRWRKQGHKDLLLPLRQFTEIIPPSPVTYENDQETWNVQVFRSIDGGAAFGFPETPEDAARSGLVSGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYGWKPDNIKVEDIGALHLIPKELSLKIVTKIEAGEQFRVYIVVPMWPEGLPESGSVQAILDWQRRTMEMMYTDIAQALRAKQIYDADPKDYLTFFCLANREVKKSGEYIPQEHPEEDSDYKKAQENRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLAVNEPARGQIHGFRMSLWYEHTGLLDNLFLQPESLECIRKMNKIAERYWDLYSSESLERDLPGHLLMYPVGVTNAGEVTELPGTEFFPDTKARVLGTKSDYLPPILTT
A9NV59_______________MFTHHQKIVVVDSPLPGGGSEQRRIVSFVGGIDLCDGRYDTQFHSLFRTLDSVHHDDFHQPNFPGGAIDKGGPREPWHDIHSKLEGPVAWDVLYNFEQRWRKQGQKDLLLPLRQFSEISPPSAVTYEDDQETWNVQVFRSIDGGAAFGFPETPEDAARSGLVSGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYGWKPDDIKGQDIGALHLIPKELSLKIVSKIEAGEQFRVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQALRAKQIYDADPRDYLTFFCLANREVKKNGEYMPQVEPEEDSDYKRAQQNRRFMIYVHAKMMIVDDEYILIGSANINQRSMDGARDSEIAMGAYQPFHLAVNEPARGQIHGFRMSLWYEHTGMLDNLFLQPENVQCIRKVNKIAERYWDLYSSESLERDLPGHLLMYPVGITNEGEVTELPGSEFFPDTKARIFGTKSDLLPPILTT

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
570		40	60		1.0
588	87			12	0.992554
589			75	25	1.0
605		87		12	0.992554
711	20			80	0.995493
2451	88		11		0.999952
2452			11	88	0.999952
2567	90		10		0.90298
2639	81	18			1.0
2640		6	81		0.999943
2641		6		81	0.999943
2642	81		6		0.999943
2645		89	10		0.999919
2647	84	5		10	0.999846
2650	89		10		0.999919
2971	85		14		0.993533
2994		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain