SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23902

Length: 1673 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23902

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative n=2 Tax=fabids RepID=B9S7C0_RICCO	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	90%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	90%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	90%
Blast2go	WD40-repeat-containing domain	IPR017986	-	90%
Blast2go	WD40 repeat, conserved site	IPR019775	-	90%
Blast2go	WD40 repeat, subgroup	IPR019781	-	90%
Blast2go	WD40 repeat 2	IPR019782	-	90%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQY8

Fln msg:

Fln protein: MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWYGHNGERLGTYRGHNGAVWCCDVSRDSTRLITSSADQTAKLWNVETGTQLFSFNFESPARAVDLAVGDKLVVITTDPFMELPSAIHIKRIEKDLSKQTADSVLTITGIKGRINRAVWGPLNSTIISGGEDSVVRIWDSETGKLLRESDKETGHQKAITSLCKSADGSHFLTGSLDKSARLWDIRTLTLIKTYVTERPVNAVAISPLLDHVVIGGGQEASHVTTTDRRAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRSFASGGEDGYVRLHHFDPDYFHIKM*

Protein Length: 328

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAAATCTATCAACAAAAACCCTTGGAACACTTACATGGAGGGCCTTATACGTCGTGACCTTGGCTGTCATCTCATCTTTTGCGTCTTTCATCATCGGTGCCAGTGCTCGCGGATTGCCTACTCTGGATACCGAGTTGATTACTTGCAATATTTCTTGTTTTGGGCTTCCGCGGTTCTTCAGAATTGAAGAGCGCTTAGGGTTTGTTATTTATTGCAGAAGTCCGATAAGGAACATAATACATTGCAAGCAAG_-_ATGAGGCCGATTTTGATGAAGGGCCACGAGAGGCCTCTGACGTTTCTCAAGTATAACAGGGATGGGGACTTGCTGTTTTCTTGTGCGAAGGATCACACGCCCACCGTCTGGTATGGACACAACGGGGAGCGCCTTGGGACCTATCGAGGACACAACGGTGCTGTCTGGTGCTGTGATGTCTCAAGGGACTCTACACGTTTAATAACCAGCAGTGCAGATCAGACTGCCAAGTTATGGAACGTGGAGACGGGAACTCAACTATTTTCTTTTAACTTTGAATCCCCAGCTAGAGCGGTGGACCTTGCCGTAGGGGATAAGCTTGTTGTAATAACCACAGATCCATTTATGGAGTTGCCTTCAGCAATTCATATTAAACGTATTGAGAAGGATCTGTCAAAGCAGACTGCTGATTCTGTACTTACAATAACCGGGATCAAAGGAAGGATAAACAGAGCTGTTTGGGGCCCCCTAAATAGTACAATAATCAGTGGTGGAGAAGATTCTGTTGTTCGTATTTGGGACTCAGAGACAGGAAAGCTGCTCAGGGAAAGTGACAAGGAAACAGGCCATCAGAAAGCTATAACATCTTTGTGCAAGTCTGCAGATGGATCCCACTTCCTCACAGGGTCCCTAGATAAATCAGCCAGGCTATGGGATATCAGGACTTTAACTCTTATTAAGACGTATGTCACAGAGCGCCCTGTAAATGCAGTTGCAATTTCTCCACTACTTGACCATGTTGTGATAGGTGGAGGTCAGGAAGCATCTCATGTGACTACTACTGATCGTCGTGCAGGAAAATTTGAAGCAAAATTCTTTCATAAGATTCTTGAAGAAGAAATTGGCGGTGTTAAAGGACACTTTGGACCTATAAATGCACTGGCATTTAATCCTGATGGAAGGAGCTTTGCGAGTGGTGGAGAGGACGGTTATGTAAGATTGCATCATTTTGATCCTGATTACTTTCACATCAAGATGTAA___TTTGGTACTTTGGAAAGAAGATTTGGTCTGTAGCGTTTCTCATTGCCAGGAATTCACAAAAAATATCACACAATTAGTGTCTTGATATGTAAGATTCTCGAGAAGTAGGAAATTTTAAGAGGTTTTAACAAATTTTGGGGAGGCTTGATTGATTTTTCAGACAGAATTGTTTGTATCTTGTTGGCAATCATTATTATTTATATACTTCAGCTGAGCTGGGTCGTGGTACAAACATTTTACATCCTATAACAAAATATAGTGTCATAAGTTTACACCAGGTAACAACTCTATATCCAAAGCTGCAGTTAAGTTGTCCCTGCCCTTCTGTGGAAGGCTTAATTAATTTCTACAATATTCTTGATAAATAACTATTCTTGCTTTCATTACTCAATATATTTTCACGAGGAATTTGAAT

Fln Alignment:

sp_v1.1_unigene23902___MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWYGHNGERLGTYRGHNGAVWCCDVSRDSTRLITSSADQTAKLWNVETGTQLFSFNFESPARAVDLAVGDKLVVITTDPFMELPSAIHIKRIEKDLSKQTADSVLTITGIKGRINRAVWGPLNSTIISGGEDSVVRIWDSETGKLLRESDKETGHQKAITSLCKSADGSHFLTGSLDKSARLWDIRTLTLIKTYVTERPVNAVAISPLLDHVVIGGGQEASHVTTTDRRAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRSFASGGEDGYVRLHHFDPDYFHIKM
B8LQY8_______________MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWYGHNGERLGTYRGHNGAVWCCDVSRDSTRLITSSADQTVKLWNVETGTQLFSFNFESPARAVDLAEGDKLVVITTDPFMELPSAIHIKRIEKDLSKQSADSILTITGIKGRINRAVWGPLNRTIISGGEDAVVRIWDSETGKLLRESEKETGHQKPITSLFKSADGSHFLTGSLDKSAKLWDIRTLTLIKTYVTERPVNAVAISPLLDHVVIGGGQEASHVTTTDRRAGKFEAKFFHKILEEEIGGVKGHFGPINALAFNPDGRSFASGGEDGYVRLHHFDNDYFHIKM

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
75		75		25	0.996473
76	25		75		0.996473
79		25	75		0.996473
80	25			75	0.996473
81			75	25	0.996473
82	75			25	0.996473
83		75		25	0.996473
87			75	25	0.996473
88	25		75		0.996473
92	25		75		0.996473
97		80	20		0.995493
98			40	60	1.0
99		60	20	20	0.99255
100	60		20	20	0.99255
101		20		60	0.99255
102		60		40	1.0
106			20	80	0.995493
1019	11		88		0.999937
1282	92	7			0.999602
1288		7		88	0.998862
1649		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain