SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23891

Length: 1186 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23891

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar ATP synthase 21 kDa proteolipid subunit; K03661 V-type H+-transporting ATPase 21kDa proteolipid subunit [EC:3.6.3.14]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	94%

Source	ECs	Term	Type	e value	Identity
AutoFact	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	78%

Source	KEGGs	Term	Identity
AutoFact	Oxidative phosphorylation	00190	78%
AutoFact	Photosynthesis	00195	78%
AutoFact	Methane metabolism	00680	78%
AutoFact	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen transport	GO:0006818	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	vacuole	GO:0005773	Cellular Component	94%
Blast2go	membrane	GO:0016020	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	0.0	94%
Blast2go	ATPase, F0/V0 complex, subunit C	IPR002379	-	0.0	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT77

Fln msg:

Fln protein: MAKSSSWAHALVQISPYAYSAVGIGIAIGVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSTNIFAPEAMRAGFAIFASGIIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTNAQ*

Protein Length: 178

Fln nts: CGTCGTGACCTTGGGTGTATCTGGGTGTCCACCCAGAACTGGAGGCCCGAGCGCTTTCTACCCACGAAAGGAAGAAGTTGAGGGCAACTAACGGCTTTGTTGAGAAGTAAACATAATTTACCGACGGAGGGACCGAATATGATAGGTTGATTATGGATCTATAGCTGGACGGCCATCGTATTGCCCTTTGAAAGGCTGGTCAGTGGTCTGCTGGCTTCAATTTGAATCAGATTTAGGTCGATCTGGCTTCACTGTATACAAATTTAGTTAATATTGATATTAAACAGATTGACTAGGTCGAGGATTATCGGGTTTTGACGCGCAGGTAATTGGAACTCATA_-_ATGGCGAAATCAAGTTCATGGGCACATGCGCTGGTCCAGATATCTCCCTATGCATATTCTGCAGTGGGTATTGGCATAGCGATTGGGGTTTCTGTATTGGGCGCTGCCTGGGGGATATATACAACAGGAAGTAGTCTTATCGGTGCGGCAATTAAGGCTCCGCGTATTACATCCAAAAATCTTATCAGTGTAATTTTCTGTGAAGCTGTGGCCATATATGGTGTTATTGTGGCAATCATTCTACAGACAAAGCTAGAGAGTGTTCCATCTACAAACATATTTGCACCAGAGGCAATGAGAGCAGGATTTGCCATATTTGCATCTGGAATCATCGTGGGTTTTGCCAATCTAGTTTGCGGGGTTTGTGTTGGCATAATCGGAAGTAGCTGTGCACTTGCAGATGCCCAAAATTCTTCACTGTTTGTGAAAATTTTAGTTATTGAAATTTTTGGGAGTGCACTGGGGCTGTTTGGCGTGATTGTTGGCATTATAATGTCAGCCCAAGCTGCCTTTCCAACAAACGCTCAGTAA___GGACACTGACGGATTTAAGTGTGGCTGTGTAATCTTCTTTATGGTTACATTTTAATTTTTCAGTTTTTGGTTACAGTAGAGAGAATGGTTTACGATGACATGAATTGATTGTCCTCTCGTCCCCTTTCATCATTACAGTGACGATTGTATTTATGCTATCCTCTATGTGTTTTCTATTCCTCATTTCGTGGGCCAGCATACACAAAAACTTCATTTATTCAGTACTCGCTTCTGAAATGTAAACCATTTAGCAACGTCTATTCCAAGTCAGAATGCTGGATCAATATATTCGATTATTTCTTTGGTCAAAACAG

Fln Alignment:

sp_v1.1_unigene23891___MAKSSSWAHALVQISPYAYSAVGIGIAIGVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPSTNIFAPEAMRAGFAIFASGIIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTNAQ
A9NT77_______________MAKSSSWAHALVQISPYAYSAVGIGIAIGVSVLGAAWGIYTTGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSTNMFAPEAMRAGFAIFASGVIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTKVQ

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
74	85	14			0.993533
76	85			14	0.993533
77	85	14			0.993533
83		14	85		0.993533
84		14	85		0.993533
85			85	14	0.993533
86		85		14	0.993533
87	85		14		0.993533
88	85		14		0.993533
91	85		14		0.993533
92	85			14	0.993533
95	12		75	12	0.975346
98	12	12		75	0.975346
99	12	12		75	0.975346
100		12	87		0.992554
106	87	12			0.992554
107	87			12	0.992554
111	87	12			0.992554
112	87			12	0.992554
207			61	38	1.0
227	61			38	1.0
259	52		47		1.0
303	50		50		1.0
312	50		50		1.0
326	43		56		1.0
340	68			31	1.0
341		43		56	1.0
420	50	50			1.0
474		40		60	1.0
489	50		50		1.0
492	66		33		0.997452
574			85	14	0.993533
577	85	14			0.993533
598			85	14	0.993533
621	8		91		0.999807
640	8	91			0.999766
753		92		7	0.999532
802		88		11	0.999937
884	88		11		0.999937
901			11	88	0.999952
970		75		25	1.0
1039	84	15			1.0
1049		15		84	1.0
1062	16		83		1.0
1083	10	89			1.0
1183	60		20	20	0.99255
1185	50			50	1.0
1186	66			33	0.997452
1187	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain