SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23863

Length: 2137 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23863
CAAGGTAAAATGGTTACCAAGTATTTCAAATAAATAGAGAAAAGCTTCTAGACGAGAGTTTCAGAATTAAGCGGAGGAACAAAGGTTTCAAACCTGGCCGGGGAGCCGGTTACAAGAAACCATCAAACCAAAGGAAAATCCAAAATCCATTGAAGCCAAACGACCGAAAGGAAAAGGGTAAATGGATTCCATGGATGCCATGCTAGCGCAGGTACAGGGGTTTTCAGCTACCAATGACGATCTCACACATCTTCATGGATTACTTAAGCAAAACGAGGAAGCTCTACGAGAGCAAGGCTCTAGACTGTCGTCCGTGTTGACTCAATTGGACCCTGCCAAGCACTCTCTTGGTTATCTATACGTCTTGGAAGCCTATTCATCTAGTTCAATTCCAAGAGAGCAGGCTGAGGGATTCATGCTGATTGCCTCCAAGTTTATCAATTCATGCTCAACAGAACAAATACGAATAGCTCCCGAAAAGTTCACTGTTCTCTGCAGGAGATTAAAGGAACAAGCTATGCAGTTGCAAGTGCCAATACAGGCAATCATTCCGCTGCGAACGGCTGTTCGGAAACTTCAACCTTCTCCCGAGCATTTGACTCCTCTGCACCCAGACCTTTTGCTTGTATGTTTGCTGGCTAAATGCTATAAAGCTGCATTAAGCATTTTGGAGGAGGACATTTTTGAGATTGATATACCAAAGGATTTCTTATTGTATTGCTATTATGGGGGAATGATTTTTATTGGATTGAAACGCTTCAACAAAGCCCTAGAATTTTTTCAGCATGCTATCACAGCCCCAGCGACAACTTTAACTGCAATAACTGTGGAAGCGTACAAAAAGTTTGTCCTAGTTTCTCTCATTCAGACTGGTCAGGTTCCAGCATTTCCAAAATACACACCTGCTGTTGTCCAAAGAAATTTGAAATCTTGCACTCAGCCCTACATTGATTTAGCAAACAACTACAGTAGTGGGAAAATTTCTGTATTGGAAGCTTGTGTCAACACGAACACAGAGAAGTTCAAGAATGATAGTAATTTGGGGTTAGTCAAGCAAGTTTTGTCATCTCTTTATAAACGGAATATTCAGAGGTTGACACAGACATATCTGACCCTCTCTCTTCAAGACATAGCAAGTACGGTACAGTTGGAGACTGCTAAGCAGGCTGAACTCCATGTTCTGCAGATGATTCAAGATGGTGAGATTTTTGCAACCATAAATCAGAAAGATGGCATGGTGAGCTTCAATGAGGATCCTGAACAGTACAAAACATGTCAGATGACTGAATATATAGATACTGCGATTCGGAGAATCATGGCACTATCAAAGAAGCTCACCACAGTAGATGAGCAGATTTCGTGTGATCATTCCTACCTGAGTAAGGTGGGGAGAGAGCGTTCAAGATTTGACATAGACGATTTTGATACTGTTCCCCAGAAGTTCACAAATATGTAACGTTGATGAGAATCATCTTCAAGACTTGCTTGTATTCATTGCTTTCTATGTGAATTGATAGTCTGTTAATAATAGTACTGTGGCCGAGTCCAGAAAGGATATCTCTTGGTATTATCACTTGACATGCCATCAAAAAAATCTCAAATTTCTCAACGTCTAGTCTTGATTTTGATTATGAATGTGACTTTTAGTTGTGACATTTGAGCACCTCGAGTGAACTACAAAGTTGCATGTTTCTCAGTAGTGTATAGGCAATGCTTTTGGGATTACTTATATTTTTAGATGTGTTATGCTAATTTTTGGCTTCAATTTCATAATATTGGTGTTGGCAGTCCACATCTTTTCCGGAAGTTATTACCTCCAGTTGAAAGTGGATGTAGTACCCTTAAAATTCTGTGAGCTAATGTATAAGGATCAAACAGACTGTTCACTTGTCTTGTGTGGAGCTTCGTCTCCATGAAGAAACCCTGAGCTCAAAAAAAAATTTACACTCCCTAGATAGAGTTTGAGTAATATGTGGGATTATTGCATTATAGTGGTTGAGTTTAATTTGTTCTATTGCCATGCATTATAATTTATAACTGAGCATGAGTTTAATACATGATCAAATTTTCATGTGTATATTTTGTAAATGCTCTACTACACTCCGAATCTTGAGTAATTGTACTAGATATTGACATC

Ace file of the UniGene sp_v1.1_unigene23863

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit S3, putative; K12177 COP9 signalosome complex subunit 3	-	-	57%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	64%
Blast2go	cop9 signalosome complex subunit 3	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	G2 phase of mitotic cell cycle	GO:0000085	Biological Process	75%
Blast2go	cullin deneddylation	GO:0010388	Biological Process	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	signalosome	GO:0008180	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Proteasome component (PCI) domain	IPR000717	-	0.0	75%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SV28

Fln msg:

Fln protein: MDSMDAMLAQVQGFSATNDDLTHLHGLLKQNEEALREQGSRLSSVLTQLDPAKHSLGYLYVLEAYSSSSIPREQAEGFMLIASKFINSCSTEQIRIAPEKFTVLCRRLKEQAMQLQVPIQAIIPLRTAVRKLQPSPEHLTPLHPDLLLVCLLAKCYKAALSILEEDIFEIDIPKDFLLYCYYGGMIFIGLKRFNKALEFFQHAITAPATTLTAITVEAYKKFVLVSLIQTGQVPAFPKYTPAVVQRNLKSCTQPYIDLANNYSSGKISVLEACVNTNTEKFKNDSNLGLVKQVLSSLYKRNIQRLTQTYLTLSLQDIASTVQLETAKQAELHVLQMIQDGEIFATINQKDGMVSFNEDPEQYKTCQMTEYIDTAIRRIMALSKKLTTVDEQISCDHSYLSKVGRERSRFDIDDFDTVPQKFTNM*

Protein Length: 426

Fln nts: CAAGGTAAAATGGTTACCAAGTATTTCAAATAAATAGAGAAAAGCTTCTAGACGAGAGTTTCAGAATTAAGCGGAGGAACAAAGGTTTCAAACCTGGCCGGGGAGCCGGTTACAAGAAACCATCAAACCAAAGGAAAATCCAAAATCCATTGAAGCCAAACGACCGAAAGGAAAAGGGTAA_-_ATGGATTCCATGGATGCCATGCTAGCGCAGGTACAGGGGTTTTCAGCTACCAATGACGATCTCACACATCTTCATGGATTACTTAAGCAAAACGAGGAAGCTCTACGAGAGCAAGGCTCTAGACTGTCGTCCGTGTTGACTCAATTGGACCCTGCCAAGCACTCTCTTGGTTATCTATACGTCTTGGAAGCCTATTCATCTAGTTCAATTCCAAGAGAGCAGGCTGAGGGATTCATGCTGATTGCCTCCAAGTTTATCAATTCATGCTCAACAGAACAAATACGAATAGCTCCCGAAAAGTTCACTGTTCTCTGCAGGAGATTAAAGGAACAAGCTATGCAGTTGCAAGTGCCAATACAGGCAATCATTCCGCTGCGAACGGCTGTTCGGAAACTTCAACCTTCTCCCGAGCATTTGACTCCTCTGCACCCAGACCTTTTGCTTGTATGTTTGCTGGCTAAATGCTATAAAGCTGCATTAAGCATTTTGGAGGAGGACATTTTTGAGATTGATATACCAAAGGATTTCTTATTGTATTGCTATTATGGGGGAATGATTTTTATTGGATTGAAACGCTTCAACAAAGCCCTAGAATTTTTTCAGCATGCTATCACAGCCCCAGCGACAACTTTAACTGCAATAACTGTGGAAGCGTACAAAAAGTTTGTCCTAGTTTCTCTCATTCAGACTGGTCAGGTTCCAGCATTTCCAAAATACACACCTGCTGTTGTCCAAAGAAATTTGAAATCTTGCACTCAGCCCTACATTGATTTAGCAAACAACTACAGTAGTGGGAAAATTTCTGTATTGGAAGCTTGTGTCAACACGAACACAGAGAAGTTCAAGAATGATAGTAATTTGGGGTTAGTCAAGCAAGTTTTGTCATCTCTTTATAAACGGAATATTCAGAGGTTGACACAGACATATCTGACCCTCTCTCTTCAAGACATAGCAAGTACGGTACAGTTGGAGACTGCTAAGCAGGCTGAACTCCATGTTCTGCAGATGATTCAAGATGGTGAGATTTTTGCAACCATAAATCAGAAAGATGGCATGGTGAGCTTCAATGAGGATCCTGAACAGTACAAAACATGTCAGATGACTGAATATATAGATACTGCGATTCGGAGAATCATGGCACTATCAAAGAAGCTCACCACAGTAGATGAGCAGATTTCGTGTGATCATTCCTACCTGAGTAAGGTGGGGAGAGAGCGTTCAAGATTTGACATAGACGATTTTGATACTGTTCCCCAGAAGTTCACAAATATGTAA___CGTTGATGAGAATCATCTTCAAGACTTGCTTGTATTCATTGCTTTCTATGTGAATTGATAGTCTGTTAATAATAGTACTGTGGCCGAGTCCAGAAAGGATATCTCTTGGTATTATCACTTGACATGCCATCAAAAAAATCTCAAATTTCTCAACGTCTAGTCTTGATTTTGATTATGAATGTGACTTTTAGTTGTGACATTTGAGCACCTCGAGTGAACTACAAAGTTGCATGTTTCTCAGTAGTGTATAGGCAATGCTTTTGGGATTACTTATATTTTTAGATGTGTTATGCTAATTTTTGGCTTCAATTTCATAATATTGGTGTTGGCAGTCCACATCTTTTCCGGAAGTTATTACCTCCAGTTGAAAGTGGATGTAGTACCCTTAAAATTCTGTGAGCTAATGTATAAGGATCAAACAGACTGTTCACTTGTCTTGTGTGGAGCTTCGTCTCCATGAAGAAACCCTGAGCTCAAAAAAAAATTTACACTCCCTAGATAGAGTTTGAGTAATATGTGGGATTATTGCATTATAGTGGTTGAGTTTAATTTGTTCTATTGCCATGCATTATAATTTATAACTGAGCATGAGTTTAATACATGATCAAATTTTCATGTGTATATTTTGTAAATGCTCTACTACACTCCGAATCTTGAGTAATTGTACTAGATATTGACATC

Fln Alignment:

sp_v1.1_unigene23863___MDSMDAMLAQVQGFSATNDDLTHLHGLLKQNEEALREQGSRLSSVLTQLDPAKHSLGYLYVLEAYSSSSIPREQAEGFMLIASKFINSCSTEQIRIAPEKFTVLCRRLKEQAMQLQVPIQAIIPLRTAVRKLQPSPEXXXXXXXXXXXXXXXAKCYKAALSILEEDIFEID------IPKDFLLYCYYGGMIFIGLKRFNKALEFFQHXXXXXXXXXXXXXVEAYKKFVLVSLIQTGQVPAFPKYTPAVVQRNLKSCTQPYIDLANNYSSGKISVLEACVNTNTEKFKNDSNLGLVKQVLSSLYKRNIQRLTQTYLTLSLQDIASTVQLETAKQAELHVLQMIQDGEIFATINQKDGMVSFNEDPEQYKTCQMTEYIDTAIRRIMALSKKLTTVDEQISCDHSYLSKVGRERSRFDIDDFDTVPQK-FTNM
A9SV28_______________MDALDQLVAQVQALSGSEQDVAHLSSLLKQADELLRTHALRLPFSLSSLHPTKHSLGYLYLLEAQSSGTLTREQSDSFLALASSFLTVCAPEQIRLAPDKFNSVCRRLRDQAMHLHEPMRAILPLQCAIRKLQPSSEYLTAIHADYLQMCLLSKCYKASLSILEDDIFEIDQKKTSLVPRDFLLYCYYGGMIYIGLKKFSKALEFFQHAITAPTTALNAITIAAFGKYVLVSLIQNGQVPPFPKYTPAVVLRNLKSCVQDYLDLANLYASRNIAEVKRCITQHEEVFKNDNNLGLAKQVIASLYKRNIQRLTQTYLTLSLQDIANTVQLDDEKDAELHILQMIKDGDIFAAINQKDGMVSFQEDPEQYNTCDMTQRLNNEIHHIVCLAKKLTWVDEQVSCDHAYLSKIGRDRPRYD-EDFDLVPQKIYTNI

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
59			50	50	1.0
60			50	50	1.0
61			50	50	1.0
62			50	50	1.0
63		50	50		1.0
120	75		25		0.996473
228	75		25		0.996473
474		11		88	0.923564
529		88		11	0.923564
623		25		75	0.996473
627	25			75	0.996473
630	66		33		0.997452
631	33			66	0.997452
634			33	66	0.997452
636	33		66		0.997452
638	33			66	0.997452
642		33		66	0.997452
1356			92	7	1.0
1435		86	5		0.999998
1436		94	5		0.998578
1476			4	95	0.996599
1502		4		95	0.99692
1728		80		19	1.0
1840	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain