SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23852

Length: 635 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23852

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0497 membrane protein 1 n=1 Tax=Picea sitchensis RepID=U4971_PICSI	-	-	5.0e-25	45%
FL-Next	sp=CASP-like protein 5; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	plant integral membrane protein tigr01569 containing protein	-	-	8.411e-25	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	8.411e-25	59%
Blast2go	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	8.411e-25	59%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
241		10		89	1.0
244		10		89	1.0
245	89		10		1.0
248	10		89		1.0
249		10	89		1.0
250	89	10			1.0
254	89		7		0.998606
255	89		3		0.998606
257	89			10	1.0
258	88		11		1.0
262		11	88		1.0
263	88			11	1.0
265	7	92			0.999602
345		8		91	0.999766
356		11		88	1.0
357	88	7		3	0.998862
358		92		7	0.999602
362		92	7		0.999602
417	2		91	5	0.995912
419	5	91		2	0.995912
420		91	5	2	0.995912
422	85	8	5		0.999999
423	91		8		1.0
424	85	8		5	0.999999
425			94	5	0.998744
429		5		94	0.998894
432			5	91	0.995912
437		5		94	0.998894
439		5		94	0.998894
448		5	94		0.9982
449	94		5		0.9982
454	94	5			0.9982
482		5	95		0.997749

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain