SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23850

Length: 1561 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23850

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative alpha-xylosidase n=1 Tax=Pinus pinaster RepID=Q8VWV9_PINPS	-	-	100%
FL-Next	tr=Putative alpha-xylosidase; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	alpha-xylosidase precursor	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		76%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		76%
Blast2go	Metabolic pathways	01100		76%
Blast2go	Alpha-N-arabinofuranosidase.	EC:3.2.1.55	-	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	76%
Blast2go	xylan catabolic process	GO:0045493	Biological Process	76%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	76%
Blast2go	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	76%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	76%
Blast2go	apoplast	GO:0048046	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 31	IPR000322	-	0.0	76%
Blast2go	Glycoside hydrolase-type carbohydrate-binding	IPR011013	-	0.0	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8VWV9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 398 aas, your sequence is shorter than subject: 311 - 910

Fln protein: MLTMGSLPVLTFICVVCAVWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGKLFPALFSILQCIFTSSS*

Protein Length: 312

Fln nts: CGTCGTGACCTTGGCTGTCACTCA_-_ATGTTGACTATGGGTTCTCTACCAGTACTAACTTTCATTTGTGTAGTCTGTGCTGTGTGGTCTTTGGGACATGGCCAGCAAGTTGGCTATGGCTATCGTCTAGTCTCTGTTGATCAAGGATCCGATGGGAGCTTGATTGGGAGCTTGGAACTCATCCAGCAAACTAATACTTATGGTCCTGACATTCCACATCTTCGGCTCTATGTCAAACATGAAACAGAGGATCGGGTGAGAGTGCATATAACCGATGCACAGACCAAGAGATGGGAAGTTCCACAGGAGTTGCTGTCCAGGGAACAAGCGCCTGCCGATCTGCCGGTAAGCAGTAGGAAGGCCAAACCAGCCAAGTCAGCTTTCGAGTTCTCGAAGTTTGCTGGAGGGGAGTTGATCGTCTCCTTCATTTCCAATCCATTTGGGTTTGCAATAAAGCGCAAATCCAATGGGGATGTGCTCTTCAACTCTTCCTATGGGAACTTGGTCTTCAAAGATCAGTACCTGGAGGTCACCACTGGCCTTCCTGCAACAGCTTCCCTGTATGGATTGGGCGAGAACACGCAGCCCAACGGGATCAAAATTCTTCCCAAAGAAGCTTATACCCTGTACACAACTGACATTTCTGCAATAAATCTGAATACAGATTTGTATGGCTCCCATCCTTTTTACATGGATGTAAGGAACGGAGGAATCTCTCATGGAGTTCTGCTGTTGAACAGCAATGGGATGGACGTTTTCTATACTGGTAATGCATTGACCTACAAGGTCATCGGGGGCGTGCTTGACTTCTACTTCTTTGCAGGGACTTCTCCATTGGATGTCGTTCAGCAGTATACTGCCCTCATTGGCCGCCCAGTTGCCCAGCCCTACTGGGCCTTTGGTAAGTTGTTTCCTGCATTGTTCTCTATATTACAATGCATATTCACATCTAGCTCATAGTGGGAAGTTTTAGTCCTTGTTCTCACATGGATGTCTGTGCCAACTGCCTACACATTTTAGAATATGATGTAAGGGCAGGGGGTAGGGTTTTGGGTTTTGGGCTTTTCGGCATATTGGATTTACAGCAGAAACTTTCACGAGGTTTTCTTGTTGGGAGTTTAATAGAGTTGAAATCTCTTTGCTTTGTTGGATCAACAGAATACTCTGCAGTTACAAGGCTTACTATTTAATTTCAGAAAGCTATAGTTTGTATATTGTAAGAGTATCGCATCTAGCGTATGGTTCTTGGGGTACACTGAACTCTAAATCTCAAGCATATGCAAAACTGAGATTTGGGAGTTGGATTATCACGCTCGTAAACACGTTGTTGCTATATTTGTGCTTTTTTATTTTGGGAAAGAAGCTTCCTGGGAAAATGATTTTATCTCCTGCAACTTCTATACCTTGTTTATTTCCTGCAACTTCTAAGCCTTATTTGGATTTTAGTAAAGTATGATGCTATAAATTTATCTCCTGCAAGTTCTAAATCTGATTTATCTCCTGCAACTTCTATCTCTGATTTATCTCTAAGTCTGATTTGAATTTTAGTAAAGTACGGTTCTAT

Fln Alignment:

sp_v1.1_unigene23850___MLTMGSLPVLTFICVVCAVWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFG
Q8VWV9_______________MLTMGSLPVLTFICVVCAVWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFG

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
17	14		85		0.993533
19		85	14		0.993533
21		83	16		1.0
22			16	83	1.0
23	5	83	11		0.999887
24	66	5	11		1.0
48	93			6	0.999264
49			93	6	0.999264
50			6	93	0.999264
51	93		6		0.999264
54	93		6		0.999264
55	93			6	0.999264
57	6			93	0.999264
58		6		93	0.999264
307		12		87	0.999964
334			90	10	0.90298
498		46		53	1.0
499		46		53	1.0
510	46		53		1.0
587	90		10		0.90298
646	87		12		0.992554
693		22		77	0.999999
694		22	77		0.999999
696	77			22	0.999999
700	77	22			0.999999
701	77			22	0.999999
702		77	22		0.999999
703			77	22	0.999999
704		22	77		0.999999
706		22	77		0.999999
707			77	22	0.999999
714		11		88	0.923564
729		11	88		0.923564
730			11	88	0.923564
734	88	11			0.923564
736	88			11	0.923564
737			88	11	0.923564
738		88	11		0.923564
739	88		11		0.923564
740	88	11			0.923564
743			88	11	0.923564
744		11	88		0.923564
747		11	88		0.923564
748	11		88		0.923564
800			10	90	0.90298
802		10	90		0.90298
805		10		90	0.90298
807		90		10	0.90298
917			15	84	0.999986
971	22		77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain