SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23836

Length: 1579 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23836

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BZIP domain class transcription factor n=2 Tax=Malus x domestica RepID=D9ZIQ3_MALDO	-	-	4.0e-38	60%
FL-Next	sp=ABSCISIC ACID-INSENSITIVE 5-like protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	abscisic acid responsive elements-binding factor	-	-	8.1009e-38	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	8.1009e-38	66%
Blast2go	response to salt stress	GO:0009651	Biological Process	8.1009e-38	66%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	8.1009e-38	66%
Blast2go	DNA binding	GO:0003677	Molecular Function	8.1009e-38	66%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	8.1009e-38	66%
Blast2go	protein binding	GO:0005515	Molecular Function	8.1009e-38	66%
Blast2go	nucleus	GO:0005634	Cellular Component	8.1009e-38	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9M7Q5

Fln msg: Distance to subject end: 169 aas, your sequence is shorter than subject: 219 - 392

Fln protein: MGSRTMLSSNGGRTPQFQPLVRQNSLYNLTLEEVQNQLGDASKPLSSMNMDELLKNIWTQEESQAISMAIGNGPMNGVPPNSAPASGGLQRQGSLTIPRTLSRKTVDEVWRDIQQSQGKSNEEKKPQQRQSTFGEMTLEDFLVKAGVVREDNNGNSNNNNSSAVTVGIAESPQPVSVCGVPTAGIGMDAMAAAQNLQQQAEWYQYQLNTAQQQQQQQQQ

Protein Length: 220

Fln nts: TAGGAGGCAGGGGTATAGGCTTTTTTGGGCTGTGTAGGGACAAATCCCTTGAACAAATTTTCAAATGCTATTTATGTGTGATGTGGACGGTGGAGTGAGGGCCACGGGAAGTAGACGGTAGGAGGCAGGGGTATAGGCTTTTTGGGCTGTGTCTGTCGCTTCGAGACGGCTTCTCATTGGAGCGAAACGCCTCTCGGCATTTGGGTCAGTGAACCAACGAACGCTGGCTTCAAGGTTTTCGTTTTATCTTTCTTATTTCACTTCCTTGGATTTTGTTTCCTTTCCGATCCTGAAACTGATTCATTGTGTGAGTTTTCCGCGAATTAACTGATCAGGGTTTCGGCCTCTGTATCAAATGATGTTTTGGGGAGCTTTTCTGGCTCGAAATGACGAGGCCCACATGGCCAAATCACTGTTTTCCCTAAGCTGAATGACTACAACTCATCTTCAAGGCATCTATAACTGTAAATTTCGATACCTGGGTCGATCCGTGTGCGACCCTCGTCCGAGAAAAGAGAACACAGCAGCATTGGTAGGTCTCGGGTTCGATACACAGCTGGGGAAGAATTTCAAAATAAAACGCAAGCCTCGGGTTTGGGCTCAGATGCACACACGACAATAATACATCATAGGAGTAGCGGCGTAGGTTGTGTGTTCAAACCCCATCTAGGGAAAATACCGTGAAGCTCGCTTGTCGCAAGTTCGACTGACATCGACTGAATTGCATTTCTTAGTCGGCAAAAATATTAAAGACTCAAGACAAAGAGGGGGTTACGGGAGCAGGCCGCGGGTTCGATCCCAAGATAAGGAAAAAAGAAAGAAAATTTCATGAATTGGGCCTGTAGGTTCCAGTCGCAAAATTAAAACCTATCGGTCTCGTCTTCGAGCTAAAGTTGGGGAAAAAGCTAAGCTCTCAGGGA_-_ATGGGTTCCCGCACAATGCTGTCCTCTAATGGCGGCCGGACACCTCAGTTCCAACCACTCGTTCGACAGAATTCTTTATACAATTTAACGCTGGAGGAGGTCCAGAACCAGCTCGGGGACGCCAGCAAGCCGCTTAGCAGCATGAACATGGACGAGCTCCTGAAGAACATTTGGACACAAGAGGAAAGCCAGGCTATATCCATGGCGATCGGCAACGGGCCCATGAACGGCGTTCCTCCCAACTCTGCCCCTGCCAGCGGTGGTTTGCAGCGTCAAGGGAGCCTTACAATTCCCAGAACTCTCAGCCGCAAGACTGTGGACGAGGTGTGGAGGGATATTCAGCAGAGCCAGGGAAAGAGCAACGAAGAGAAGAAGCCGCAGCAGAGGCAATCCACCTTTGGTGAAATGACCCTGGAGGATTTCTTAGTGAAAGCCGGGGTAGTCAGGGAGGACAACAATGGCAATAGTAATAATAATAACAGTAGTGCTGTTACTGTCGGTATTGCAGAGAGTCCCCAGCCAGTCTCGGTTTGCGGCGTGCCCACTGCTGGGATAGGGATGGATGCAATGGCAGCAGCACAAAATTTGCAGCAACAGGCAGAGTGGTACCAGTATCAACTCAACACTGCCCAGCAGCAGCAGCAGCAGCAGCAACAACA

Fln Alignment:

sp_v1.1_unigene23836___MGSRTMLSSNGGRTP---QFQPLVRQNSLYNLTLEEVQNQLGDASKPLSSMNMDELLKNIWTQEESQAISMAIGNGPMNGVPPNSAPASGGLQRQGSLTIPRTLSRKTVDEVWRDIQQSQGKS-NEEKKPQQRQSTFGEMTLEDFLVKAGVVRED
Q9M7Q5_______________MGTHIDINNLGGDTSRGNESKPLARQSSLYSLTFDELQSTLGEPGKDFGSMNMDELLKNIWTAEDTQAFMTTTSSVAAPG-PSGFVPGGNGLQRQGSLTLPRTLSQKTVDEVWKYLNSKEGSNGNTGTDALERQQTLGEMTLEDFLLRAGVVKED

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
353	81		18		0.999994
521	12		87		0.992554
554		87		12	0.992554
620	75			25	1.0
627	12	75			0.975346
645	12		87		0.992554
647	87			12	0.992554
648		12	87		0.992554
650		14		85	0.993533
651	14			85	0.993533
655	14			85	0.993533
658	14			85	0.993533
661	85		14		0.993533
662	85		14		0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
1388	1399	TAA TAA TAA TAA	12
1551	1573	CAG CAG CAG CAG CAG CAG CAG CA	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain