SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23827

Length: 1004 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23827

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H4 n=1 Tax=Zea mays RepID=B6TJ90_MAIZE	-	-	9.0e-38	98%
FL-Next	sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h4	-	-	7.23121e-38	100%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	7.23121e-38	100%
Blast2go	chromosome organization	GO:0051276	Biological Process	7.23121e-38	100%
Blast2go	binding	GO:0005488	Molecular Function	7.23121e-38	100%
Blast2go	nucleolus	GO:0005730	Cellular Component	7.23121e-38	100%
Blast2go	vacuole	GO:0005773	Cellular Component	7.23121e-38	100%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.23121e-38	100%
Blast2go	chromosome	GO:0005694	Cellular Component	7.23121e-38	100%
Blast2go	chloroplast	GO:0009507	Cellular Component	7.23121e-38	100%
Blast2go	thylakoid	GO:0009579	Cellular Component	7.23121e-38	100%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H4	IPR001951	-	7.23121e-38	100%
Blast2go	Histone core	IPR007125	-	7.23121e-38	100%
Blast2go	Histone-fold	IPR009072	-	7.23121e-38	100%
Blast2go	Histone H4, conserved site	IPR019809	-	7.23121e-38	100%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
253	33	66			0.997452
255	66		33		0.997452
257	66		33		0.997452
515		20		80	0.995493
731	16			83	0.994512
734		83	16		0.994512
735	83		16		0.994512
853			25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain